(24 nodes) U2 snRNP, and Sm domain network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_18352	Small nuclear ribonucleoprotein Sm D3. (91 aa)
	SPRG_17726	Ubiquitin-like domain-containing protein. (132 aa)
	SPRG_14343	Splicing factor subunit; Belongs to the SF3B5 family. (86 aa)
	SPRG_11492	Small nuclear ribonucleoprotein G. (76 aa)
	SPRG_13551	PSP domain-containing protein. (521 aa)
	SPRG_09658	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	SPRG_09710	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (108 aa)
	SPRG_07720	Small nuclear ribonucleoprotein Sm D3. (134 aa)
	SPRG_07006	zf-U1 domain-containing protein. (77 aa)
	SPRG_10653	Uncharacterized protein. (1039 aa)
	SPRG_10647	Uncharacterized protein. (491 aa)
	SPRG_05695	Small nuclear ribonucleoprotein F. (83 aa)
	SPRG_06763	Splicing factor 3B subunit 1. (1235 aa)
	SPRG_08823	Uncharacterized protein. (110 aa)
	SPRG_05192	Uncharacterized protein. (308 aa)
	SPRG_04704	Sm domain-containing protein. (167 aa)
	SPRG_03527	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	SPRG_04383	RRM domain-containing protein. (175 aa)
	SPRG_04412	CPSF_A domain-containing protein. (1044 aa)
	SPRG_04119	Sm domain-containing protein. (99 aa)
	SPRG_00891	Uncharacterized protein. (142 aa)
	SPRG_00106	Pre-mRNA branch site p14-like protein. (121 aa)
	SPRG_01439	C2H2-type domain-containing protein. (494 aa)
	SPRG_00491	Small nuclear ribonucleoprotein Sm D2. (107 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00106	SPRG_00491	A0A067D1A1	A0A067D9M7	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein Sm D2.	0.905
SPRG_00106	SPRG_00891	A0A067D1A1	A0A067CZZ3	Pre-mRNA branch site p14-like protein.	Uncharacterized protein.	0.905
SPRG_00106	SPRG_01439	A0A067D1A1	A0A067D6G0	Pre-mRNA branch site p14-like protein.	C2H2-type domain-containing protein.	0.978
SPRG_00106	SPRG_03527	A0A067D1A1	A0A067CM60	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.990
SPRG_00106	SPRG_04119	A0A067D1A1	A0A067CQH4	Pre-mRNA branch site p14-like protein.	Sm domain-containing protein.	0.873
SPRG_00106	SPRG_04383	A0A067D1A1	A0A067CML3	Pre-mRNA branch site p14-like protein.	RRM domain-containing protein.	0.511
SPRG_00106	SPRG_04412	A0A067D1A1	A0A067CMP6	Pre-mRNA branch site p14-like protein.	CPSF_A domain-containing protein.	0.999
SPRG_00106	SPRG_04704	A0A067D1A1	A0A067CJY0	Pre-mRNA branch site p14-like protein.	Sm domain-containing protein.	0.715
SPRG_00106	SPRG_05192	A0A067D1A1	A0A067CHK6	Pre-mRNA branch site p14-like protein.	Uncharacterized protein.	0.944
SPRG_00106	SPRG_05695	A0A067D1A1	A0A067CDC5	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein F.	0.955
SPRG_00106	SPRG_06763	A0A067D1A1	A0A067CFU9	Pre-mRNA branch site p14-like protein.	Splicing factor 3B subunit 1.	0.999
SPRG_00106	SPRG_07006	A0A067D1A1	A0A067CA87	Pre-mRNA branch site p14-like protein.	zf-U1 domain-containing protein.	0.741
SPRG_00106	SPRG_07720	A0A067D1A1	A0A067C915	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein Sm D3.	0.859
SPRG_00106	SPRG_08823	A0A067D1A1	A0A067CH60	Pre-mRNA branch site p14-like protein.	Uncharacterized protein.	0.999
SPRG_00106	SPRG_09658	A0A067D1A1	A0A067C6P1	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein Sm D3.	0.859
SPRG_00106	SPRG_09710	A0A067D1A1	A0A067C737	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.873
SPRG_00106	SPRG_10647	A0A067D1A1	A0A067CBM4	Pre-mRNA branch site p14-like protein.	Uncharacterized protein.	0.999
SPRG_00106	SPRG_10653	A0A067D1A1	A0A067CAV9	Pre-mRNA branch site p14-like protein.	Uncharacterized protein.	0.907
SPRG_00106	SPRG_11492	A0A067D1A1	A0A067C2N0	Pre-mRNA branch site p14-like protein.	Small nuclear ribonucleoprotein G.	0.983
SPRG_00106	SPRG_13551	A0A067D1A1	A0A067C388	Pre-mRNA branch site p14-like protein.	PSP domain-containing protein.	0.999