(6 nodes) RNA polymerase II, core complex network (Saprolegnia parasitica)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_07688	DNA-directed RNA polymerase I. (73 aa)
	SPRG_05447	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein. (321 aa)
	SPRG_07858	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	SPRG_05117	Uncharacterized protein. (208 aa)
	SPRG_01664	RNA_pol_L_2 domain-containing protein. (117 aa)
	SPRG_03275	RPOL4c domain-containing protein. (159 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_01664	SPRG_03275	A0A067CX12	A0A067CZ22	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.999
SPRG_01664	SPRG_05117	A0A067CX12	A0A067CT03	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
SPRG_01664	SPRG_05447	A0A067CX12	A0A067CJB5	RNA_pol_L_2 domain-containing protein.	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	0.999
SPRG_01664	SPRG_07688	A0A067CX12	A0A067CCR0	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase I.	0.999
SPRG_01664	SPRG_07858	A0A067CX12	A0A067CKR3	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
SPRG_03275	SPRG_01664	A0A067CZ22	A0A067CX12	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
SPRG_03275	SPRG_05117	A0A067CZ22	A0A067CT03	RPOL4c domain-containing protein.	Uncharacterized protein.	0.999
SPRG_03275	SPRG_05447	A0A067CZ22	A0A067CJB5	RPOL4c domain-containing protein.	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	0.999
SPRG_03275	SPRG_07688	A0A067CZ22	A0A067CCR0	RPOL4c domain-containing protein.	DNA-directed RNA polymerase I.	0.999
SPRG_03275	SPRG_07858	A0A067CZ22	A0A067CKR3	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
SPRG_05117	SPRG_01664	A0A067CT03	A0A067CX12	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
SPRG_05117	SPRG_03275	A0A067CT03	A0A067CZ22	Uncharacterized protein.	RPOL4c domain-containing protein.	0.999
SPRG_05117	SPRG_05447	A0A067CT03	A0A067CJB5	Uncharacterized protein.	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	0.999
SPRG_05117	SPRG_07688	A0A067CT03	A0A067CCR0	Uncharacterized protein.	DNA-directed RNA polymerase I.	0.999
SPRG_05117	SPRG_07858	A0A067CT03	A0A067CKR3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
SPRG_05447	SPRG_01664	A0A067CJB5	A0A067CX12	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
SPRG_05447	SPRG_03275	A0A067CJB5	A0A067CZ22	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	RPOL4c domain-containing protein.	0.999
SPRG_05447	SPRG_05117	A0A067CJB5	A0A067CT03	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	Uncharacterized protein.	0.999
SPRG_05447	SPRG_07688	A0A067CJB5	A0A067CCR0	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	DNA-directed RNA polymerase I.	0.999
SPRG_05447	SPRG_07858	A0A067CJB5	A0A067CKR3	RNA polymerase Rpb3/Rpb11 dimeriZation domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999