(29 nodes) RNA Polymerase III Transcription, and RNA polymerase I complex network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_13321	RPOL4c domain-containing protein. (130 aa)
	SPRG_12350	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (142 aa)
	SPRG_15940	Uncharacterized protein. (365 aa)
	SPRG_11426	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (284 aa)
	SPRG_10671	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1153 aa)
	SPRG_11152	Uncharacterized protein. (365 aa)
	SPRG_10247	Uncharacterized protein. (428 aa)
	SPRG_20787	TFIIS central domain-containing protein. (103 aa)
	SPRG_09431	HTH_9 domain-containing protein. (607 aa)
	SPRG_07421	Uncharacterized protein. (216 aa)
	SPRG_08856	RNA_pol_L_2 domain-containing protein. (109 aa)
	SPRG_10708	RPOLA_N domain-containing protein. (1338 aa)
	SPRG_09634	RPOLD domain-containing protein. (337 aa)
	SPRG_05718	TFIIB-type domain-containing protein. (549 aa)
	SPRG_05306	Uncharacterized protein. (220 aa)
	SPRG_05305	Uncharacterized protein. (1658 aa)
	SPRG_20002	Uncharacterized protein. (242 aa)
	SPRG_03477	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (124 aa)
	SPRG_03180	Uncharacterized protein. (225 aa)
	SPRG_02881	SANT domain-containing protein. (690 aa)
	SPRG_20004	Nitroreductase domain-containing protein. (238 aa)
	SPRG_05777	Uncharacterized protein. (116 aa)
	SPRG_19892	Uncharacterized protein. (213 aa)
	SPRG_02170	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
	SPRG_05126	Uncharacterized protein. (198 aa)
	SPRG_05205	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1139 aa)
	SPRG_01449	Uncharacterized protein. (60 aa)
	SPRG_04723	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1170 aa)
	SPRG_02135	Uncharacterized protein. (672 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_01449	SPRG_02135	A0A067CUB6	A0A067D2S4	Uncharacterized protein.	Uncharacterized protein.	0.985
SPRG_01449	SPRG_02170	A0A067CUB6	A0A067CS80	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
SPRG_01449	SPRG_02881	A0A067CUB6	A0A067CNW9	Uncharacterized protein.	SANT domain-containing protein.	0.923
SPRG_01449	SPRG_03180	A0A067CUB6	A0A067CMN4	Uncharacterized protein.	Uncharacterized protein.	0.921
SPRG_01449	SPRG_03477	A0A067CUB6	A0A067CLZ5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
SPRG_01449	SPRG_04723	A0A067CUB6	A0A067CVJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
SPRG_01449	SPRG_05126	A0A067CUB6	A0A067CTR8	Uncharacterized protein.	Uncharacterized protein.	0.921
SPRG_01449	SPRG_05205	A0A067CUB6	A0A067CTZ0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
SPRG_01449	SPRG_05305	A0A067CUB6	A0A067CHX9	Uncharacterized protein.	Uncharacterized protein.	0.985
SPRG_01449	SPRG_05306	A0A067CUB6	A0A067CHA1	Uncharacterized protein.	Uncharacterized protein.	0.985
SPRG_01449	SPRG_05718	A0A067CUB6	A0A067CEC5	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.974
SPRG_01449	SPRG_05777	A0A067CUB6	A0A067CQU5	Uncharacterized protein.	Uncharacterized protein.	0.999
SPRG_01449	SPRG_07421	A0A067CUB6	A0A067C9N9	Uncharacterized protein.	Uncharacterized protein.	0.991
SPRG_01449	SPRG_08856	A0A067CUB6	A0A067C9Q8	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
SPRG_01449	SPRG_09431	A0A067CUB6	A0A067C4N1	Uncharacterized protein.	HTH_9 domain-containing protein.	0.990
SPRG_01449	SPRG_09634	A0A067CUB6	A0A067CE21	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
SPRG_01449	SPRG_10247	A0A067CUB6	A0A067C2J8	Uncharacterized protein.	Uncharacterized protein.	0.998
SPRG_01449	SPRG_10671	A0A067CUB6	A0A067BZK1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
SPRG_01449	SPRG_10708	A0A067CUB6	A0A067CB10	Uncharacterized protein.	RPOLA_N domain-containing protein.	0.999
SPRG_01449	SPRG_11152	A0A067CUB6	A0A067C288	Uncharacterized protein.	Uncharacterized protein.	0.975