(11 nodes) Mixed, incl. Copine, C-terminal, and Copine network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_15693	ZnF_CDGSH domain-containing protein. (137 aa)
	SPRG_14046	Uncharacterized protein; Belongs to the intermediate filament family. (489 aa)
	SPRG_13320	Uncharacterized protein. (549 aa)
	SPRG_16392	Uncharacterized protein. (550 aa)
	SPRG_11429	Laminin IV type A domain-containing protein. (316 aa)
	SPRG_07026	VWFA domain-containing protein. (269 aa)
	SPRG_07024	VWFA domain-containing protein. (275 aa)
	SPRG_22196	Uncharacterized protein. (4457 aa)
	SPRG_04520	Uncharacterized protein. (145 aa)
	SPRG_18994	RING-type domain-containing protein. (415 aa)
	SPRG_03810	DDA1 domain-containing protein. (118 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_03810	SPRG_13320	A0A067CWQ1	A0A067BR78	DDA1 domain-containing protein.	Uncharacterized protein.	0.784
SPRG_03810	SPRG_15693	A0A067CWQ1	A0A067BK77	DDA1 domain-containing protein.	ZnF_CDGSH domain-containing protein.	0.880
SPRG_13320	SPRG_03810	A0A067BR78	A0A067CWQ1	Uncharacterized protein.	DDA1 domain-containing protein.	0.784
SPRG_13320	SPRG_14046	A0A067BR78	A0A067BR01	Uncharacterized protein.	Uncharacterized protein; Belongs to the intermediate filament family.	0.888
SPRG_13320	SPRG_15693	A0A067BR78	A0A067BK77	Uncharacterized protein.	ZnF_CDGSH domain-containing protein.	0.670
SPRG_14046	SPRG_13320	A0A067BR01	A0A067BR78	Uncharacterized protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.888
SPRG_14046	SPRG_22196	A0A067BR01	A0A067CMH4	Uncharacterized protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.463
SPRG_15693	SPRG_03810	A0A067BK77	A0A067CWQ1	ZnF_CDGSH domain-containing protein.	DDA1 domain-containing protein.	0.880
SPRG_15693	SPRG_13320	A0A067BK77	A0A067BR78	ZnF_CDGSH domain-containing protein.	Uncharacterized protein.	0.670
SPRG_22196	SPRG_14046	A0A067CMH4	A0A067BR01	Uncharacterized protein.	Uncharacterized protein; Belongs to the intermediate filament family.	0.463