(8 nodes) Cyclin A/B1/B2 associated events during G2/M transition network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_18109	Uncharacterized protein. (172 aa)
	SPRG_14409	Uncharacterized protein. (273 aa)
	SPRG_20989	Uncharacterized protein. (866 aa)
	SPRG_09071	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family. (320 aa)
	SPRG_05536	Uncharacterized protein. (404 aa)
	SPRG_02835	N-acetyltransferase domain-containing protein. (507 aa)
	SPRG_03354	Uncharacterized protein. (599 aa)
	SPRG_18895	Uncharacterized protein. (692 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_02835	SPRG_03354	A0A067CPD4	A0A067CZC1	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.517
SPRG_02835	SPRG_05536	A0A067CPD4	A0A067CK58	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.517
SPRG_02835	SPRG_14409	A0A067CPD4	A0A067BPU5	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.736
SPRG_02835	SPRG_18109	A0A067CPD4	A0A067BNT8	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.534
SPRG_02835	SPRG_18895	A0A067CPD4	A0A067D2P1	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.534
SPRG_02835	SPRG_20989	A0A067CPD4	A0A067BXL1	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.736
SPRG_03354	SPRG_02835	A0A067CZC1	A0A067CPD4	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.517
SPRG_03354	SPRG_09071	A0A067CZC1	A0A067C9E8	Uncharacterized protein.	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	0.517
SPRG_03354	SPRG_14409	A0A067CZC1	A0A067BPU5	Uncharacterized protein.	Uncharacterized protein.	0.765
SPRG_03354	SPRG_18109	A0A067CZC1	A0A067BNT8	Uncharacterized protein.	Uncharacterized protein.	0.626
SPRG_03354	SPRG_18895	A0A067CZC1	A0A067D2P1	Uncharacterized protein.	Uncharacterized protein.	0.626
SPRG_03354	SPRG_20989	A0A067CZC1	A0A067BXL1	Uncharacterized protein.	Uncharacterized protein.	0.765
SPRG_05536	SPRG_02835	A0A067CK58	A0A067CPD4	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.517
SPRG_05536	SPRG_09071	A0A067CK58	A0A067C9E8	Uncharacterized protein.	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	0.517
SPRG_05536	SPRG_14409	A0A067CK58	A0A067BPU5	Uncharacterized protein.	Uncharacterized protein.	0.765
SPRG_05536	SPRG_18109	A0A067CK58	A0A067BNT8	Uncharacterized protein.	Uncharacterized protein.	0.626
SPRG_05536	SPRG_18895	A0A067CK58	A0A067D2P1	Uncharacterized protein.	Uncharacterized protein.	0.626
SPRG_05536	SPRG_20989	A0A067CK58	A0A067BXL1	Uncharacterized protein.	Uncharacterized protein.	0.765
SPRG_09071	SPRG_03354	A0A067C9E8	A0A067CZC1	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Uncharacterized protein.	0.517
SPRG_09071	SPRG_05536	A0A067C9E8	A0A067CK58	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Uncharacterized protein.	0.517