(11 nodes) Double-strand break repair via nonhomologous end joining, and DNA ligase, ATP-dependent, conserved site network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_17587	Uncharacterized protein. (523 aa)
	SPRG_14919	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (641 aa)
	SPRG_18138	DRMBL domain-containing protein. (253 aa)
	SPRG_10651	Uncharacterized protein. (956 aa)
	SPRG_10445	VWFA domain-containing protein. (729 aa)
	SPRG_06657	C2H2-type domain-containing protein. (228 aa)
	SPRG_08518	Uncharacterized protein. (515 aa)
	SPRG_05213	Uncharacterized protein. (264 aa)
	SPRG_04957	Uncharacterized protein. (586 aa)
	SPRG_04994	DNA ligase. (891 aa)
	SPRG_19108	SAP domain-containing protein. (613 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_04957	SPRG_04994	A0A067CKZ9	A0A067CLY3	Uncharacterized protein.	DNA ligase.	0.711
SPRG_04957	SPRG_05213	A0A067CKZ9	A0A067CHM4	Uncharacterized protein.	Uncharacterized protein.	0.558
SPRG_04957	SPRG_06657	A0A067CKZ9	A0A067CGV1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.867
SPRG_04957	SPRG_08518	A0A067CKZ9	A0A067CH84	Uncharacterized protein.	Uncharacterized protein.	0.563
SPRG_04957	SPRG_10445	A0A067CKZ9	A0A067CC18	Uncharacterized protein.	VWFA domain-containing protein.	0.641
SPRG_04957	SPRG_10651	A0A067CKZ9	A0A067C487	Uncharacterized protein.	Uncharacterized protein.	0.687
SPRG_04957	SPRG_14919	A0A067CKZ9	A0A067BKS7	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.711
SPRG_04957	SPRG_17587	A0A067CKZ9	A0A067BFN0	Uncharacterized protein.	Uncharacterized protein.	0.687
SPRG_04957	SPRG_18138	A0A067CKZ9	A0A067BPS3	Uncharacterized protein.	DRMBL domain-containing protein.	0.563
SPRG_04957	SPRG_19108	A0A067CKZ9	A0A067CYG2	Uncharacterized protein.	SAP domain-containing protein.	0.705
SPRG_04994	SPRG_04957	A0A067CLY3	A0A067CKZ9	DNA ligase.	Uncharacterized protein.	0.711
SPRG_04994	SPRG_05213	A0A067CLY3	A0A067CHM4	DNA ligase.	Uncharacterized protein.	0.715
SPRG_04994	SPRG_06657	A0A067CLY3	A0A067CGV1	DNA ligase.	C2H2-type domain-containing protein.	0.861
SPRG_04994	SPRG_08518	A0A067CLY3	A0A067CH84	DNA ligase.	Uncharacterized protein.	0.447
SPRG_04994	SPRG_10445	A0A067CLY3	A0A067CC18	DNA ligase.	VWFA domain-containing protein.	0.904
SPRG_04994	SPRG_14919	A0A067CLY3	A0A067BKS7	DNA ligase.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.910
SPRG_04994	SPRG_17587	A0A067CLY3	A0A067BFN0	DNA ligase.	Uncharacterized protein.	0.926
SPRG_04994	SPRG_18138	A0A067CLY3	A0A067BPS3	DNA ligase.	DRMBL domain-containing protein.	0.481
SPRG_04994	SPRG_19108	A0A067CLY3	A0A067CYG2	DNA ligase.	SAP domain-containing protein.	0.894
SPRG_05213	SPRG_04957	A0A067CHM4	A0A067CKZ9	Uncharacterized protein.	Uncharacterized protein.	0.558