(64 nodes) Cytosolic ribosome network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_20427	Ribosomal_L16 domain-containing protein. (245 aa)
	SPRG_07998	Ribosomal_L7Ae domain-containing protein. (279 aa)
	SPRG_08560	40S ribosomal protein. (235 aa)
	SPRG_10244	Uncharacterized protein. (260 aa)
	SPRG_10239	Ribosomal_L18_c domain-containing protein. (299 aa)
	SPRG_12394	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	SPRG_12604	Uncharacterized protein. (466 aa)
	SPRG_12395	Uncharacterized protein. (408 aa)
	SPRG_10893	30S ribosomal protein S19e. (151 aa)
	SPRG_13181	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (192 aa)
	SPRG_09485	50S ribosomal protein L34e. (120 aa)
	SPRG_09577	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (60 aa)
	SPRG_14147	60S ribosomal protein L30. (110 aa)
	SPRG_10238	Ribosomal_L14e domain-containing protein. (135 aa)
	SPRG_11912	Uncharacterized protein. (280 aa)
	SPRG_14328	MYND-type domain-containing protein. (252 aa)
	SPRG_14365	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (79 aa)
	SPRG_10070	Uncharacterized protein. (144 aa)
	SPRG_14840	Uncharacterized protein. (160 aa)
	SPRG_10789	Uncharacterized protein. (117 aa)
	SPRG_11910	Uncharacterized protein. (317 aa)
	SPRG_11911	50S ribosomal protein L35Ae. (111 aa)
	SPRG_12060	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
	SPRG_14150	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (279 aa)
	SPRG_07037	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (218 aa)
	SPRG_08491	Uncharacterized protein. (220 aa)
	SPRG_06762	60S ribosomal protein L10. (206 aa)
	SPRG_10702	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (207 aa)
	SPRG_06687	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (261 aa)
	SPRG_10428	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	SPRG_19973	40S ribosomal protein S28. (69 aa)
	SPRG_09504	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (69 aa)
	SPRG_08610	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	SPRG_05149	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	SPRG_08669	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (602 aa)
	SPRG_05335	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (389 aa)
	SPRG_05717	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (172 aa)
	SPRG_05064	60S ribosomal protein L8. (256 aa)
	SPRG_07618	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (238 aa)
	SPRG_07617	S10_plectin domain-containing protein. (137 aa)
	SPRG_07211	Ribosomal protein L28e. (143 aa)
	SPRG_02287	Ribos_L4_asso_C domain-containing protein. (549 aa)
	SPRG_02127	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
	SPRG_05559	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (134 aa)
	SPRG_01693	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	SPRG_01404	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	SPRG_05257	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (134 aa)
	SPRG_01405	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (151 aa)
	SPRG_01446	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (110 aa)
	SPRG_03619	Uncharacterized protein. (359 aa)
	SPRG_01017	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (106 aa)
	SPRG_02539	60S ribosomal protein L31. (120 aa)
	SPRG_00459	Uncharacterized protein. (117 aa)
	SPRG_02290	60S ribosomal protein. (115 aa)
	SPRG_02110	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	SPRG_01517	60S ribosomal protein L35. (123 aa)
	SPRG_00759	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (151 aa)
	SPRG_15842	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	SPRG_18348	Uncharacterized protein. (88 aa)
	SPRG_10827	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (182 aa)
	SPRG_17009	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (79 aa)
	SPRG_15807	Uncharacterized protein. (144 aa)
	SPRG_16878	60S ribosomal protein L10. (220 aa)
	SPRG_16879	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (53 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00459	SPRG_00759	A0A067D2A1	A0A067D7U6	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.994
SPRG_00459	SPRG_01017	A0A067D2A1	A0A067D0A6	Uncharacterized protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.988
SPRG_00459	SPRG_01404	A0A067D2A1	A0A067CTV2	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.997
SPRG_00459	SPRG_01405	A0A067D2A1	A0A067CY09	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.989
SPRG_00459	SPRG_01446	A0A067D2A1	A0A067CYE5	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.989
SPRG_00459	SPRG_01517	A0A067D2A1	A0A067D6Q8	Uncharacterized protein.	60S ribosomal protein L35.	0.992
SPRG_00459	SPRG_01693	A0A067D2A1	A0A067CSZ5	Uncharacterized protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.984
SPRG_00459	SPRG_02110	A0A067D2A1	A0A067D3J9	Uncharacterized protein.	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.995
SPRG_00459	SPRG_02127	A0A067D2A1	A0A067CS45	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.990
SPRG_00459	SPRG_02287	A0A067D2A1	A0A067CRY8	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.993
SPRG_00459	SPRG_02290	A0A067D2A1	A0A067D368	Uncharacterized protein.	60S ribosomal protein.	0.993
SPRG_00459	SPRG_02539	A0A067D2A1	A0A067D273	Uncharacterized protein.	60S ribosomal protein L31.	0.994
SPRG_00459	SPRG_03619	A0A067D2A1	A0A067CYY3	Uncharacterized protein.	Uncharacterized protein.	0.995
SPRG_00459	SPRG_05064	A0A067D2A1	A0A067CIL4	Uncharacterized protein.	60S ribosomal protein L8.	0.992
SPRG_00459	SPRG_05149	A0A067D2A1	A0A067CGS0	Uncharacterized protein.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.989
SPRG_00459	SPRG_05257	A0A067D2A1	A0A067CU47	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.992
SPRG_00459	SPRG_05335	A0A067D2A1	A0A067CI13	Uncharacterized protein.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.996
SPRG_00459	SPRG_05559	A0A067D2A1	A0A067CSV6	Uncharacterized protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.972
SPRG_00459	SPRG_05717	A0A067D2A1	A0A067CI27	Uncharacterized protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.993
SPRG_00459	SPRG_06687	A0A067D2A1	A0A067CCF0	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.987