(16 nodes) 90S preribosome network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_18502	Uncharacterized protein. (132 aa)
	SPRG_07434	Uncharacterized protein. (862 aa)
	SPRG_00194	WD_REPEATS_REGION domain-containing protein. (704 aa)
	SPRG_01078	Uncharacterized protein. (454 aa)
	SPRG_03143	S4 RNA-binding domain-containing protein. (183 aa)
	SPRG_02318	WD_REPEATS_REGION domain-containing protein. (810 aa)
	SPRG_19098	Uncharacterized protein. (622 aa)
	SPRG_06108	WD_REPEATS_REGION domain-containing protein. (906 aa)
	SPRG_07088	CBF domain-containing protein. (581 aa)
	SPRG_22333	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (615 aa)
	SPRG_15430	WD_REPEATS_REGION domain-containing protein. (988 aa)
	SPRG_16604	Uncharacterized protein. (134 aa)
	SPRG_14146	RRP7 domain-containing protein. (245 aa)
	SPRG_13730	Brix domain-containing protein. (287 aa)
	SPRG_09858	Bms1-type G domain-containing protein. (903 aa)
	SPRG_09592	Uncharacterized protein. (711 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00194	SPRG_01078	A0A067D1H3	A0A067D0H6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
SPRG_00194	SPRG_02318	A0A067D1H3	A0A067CW69	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
SPRG_00194	SPRG_03143	A0A067D1H3	A0A067CYP3	WD_REPEATS_REGION domain-containing protein.	S4 RNA-binding domain-containing protein.	0.989
SPRG_00194	SPRG_06108	A0A067D1H3	A0A067CEW8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
SPRG_00194	SPRG_07088	A0A067D1H3	A0A067C9P5	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.999
SPRG_00194	SPRG_07434	A0A067D1H3	A0A067CDH2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
SPRG_00194	SPRG_09592	A0A067D1H3	A0A067C333	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.940
SPRG_00194	SPRG_09858	A0A067D1H3	A0A067C0E8	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.993
SPRG_00194	SPRG_13730	A0A067D1H3	A0A067BWM8	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.999
SPRG_00194	SPRG_14146	A0A067D1H3	A0A067BVP4	WD_REPEATS_REGION domain-containing protein.	RRP7 domain-containing protein.	0.998
SPRG_00194	SPRG_15430	A0A067D1H3	A0A067BRL2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
SPRG_00194	SPRG_16604	A0A067D1H3	A0A067BTL4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.993
SPRG_00194	SPRG_18502	A0A067D1H3	A0A067BNM4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
SPRG_00194	SPRG_19098	A0A067D1H3	A0A067CUV9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
SPRG_00194	SPRG_22333	A0A067D1H3	A0A067C3X3	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
SPRG_01078	SPRG_00194	A0A067D0H6	A0A067D1H3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
SPRG_01078	SPRG_02318	A0A067D0H6	A0A067CW69	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
SPRG_01078	SPRG_03143	A0A067D0H6	A0A067CYP3	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.970
SPRG_01078	SPRG_06108	A0A067D0H6	A0A067CEW8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
SPRG_01078	SPRG_07088	A0A067D0H6	A0A067C9P5	Uncharacterized protein.	CBF domain-containing protein.	0.990