22 items (Saprolegnia parasitica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_16091	Uncharacterized protein. (356 aa)
	SPRG_10885	Ubiquitin-like domain-containing protein. (420 aa)
	SPRG_13450	Ubiquitin-like domain-containing protein. (156 aa)
	SPRG_10403	Uncharacterized protein. (193 aa)
	SPRG_10869	MPN domain-containing protein. (435 aa)
	SPRG_10888	Ubiquitin-like domain-containing protein. (96 aa)
	SPRG_09263	Uncharacterized protein. (283 aa)
	SPRG_08828	CULLIN_2 domain-containing protein; Belongs to the cullin family. (755 aa)
	SPRG_20603	Uncharacterized protein. (103 aa)
	SPRG_03925	Lipase_3 domain-containing protein. (848 aa)
	SPRG_06789	Ubiquitin-like domain-containing protein. (98 aa)
	SPRG_03072	Uncharacterized protein. (268 aa)
	SPRG_19913	Uncharacterized protein. (278 aa)
	SPRG_12074	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	SPRG_13952	Uncharacterized protein. (308 aa)
	SPRG_01077	CULLIN_2 domain-containing protein; Belongs to the cullin family. (744 aa)
	SPRG_00198	CULLIN_2 domain-containing protein; Belongs to the cullin family. (673 aa)
	SPRG_02914	Uncharacterized protein. (261 aa)
	SPRG_01614	CULLIN_2 domain-containing protein; Belongs to the cullin family. (742 aa)
	SPRG_16350	Uncharacterized protein. (214 aa)
	SPRG_17510	Uncharacterized protein. (119 aa)
	SPRG_10002	CULLIN_2 domain-containing protein; Belongs to the cullin family. (754 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00198	SPRG_01614	A0A067CXC3	A0A067D4M1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.434
SPRG_00198	SPRG_06789	A0A067CXC3	A0A067CL34	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.756
SPRG_00198	SPRG_12074	A0A067CXC3	A0A067BUZ0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-40S ribosomal protein S27a.	0.756
SPRG_00198	SPRG_13450	A0A067CXC3	A0A067C0Y9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.756
SPRG_00198	SPRG_16091	A0A067CXC3	A0A067BV80	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.756
SPRG_01077	SPRG_01614	A0A067CWD0	A0A067D4M1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.430
SPRG_01077	SPRG_06789	A0A067CWD0	A0A067CL34	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.616
SPRG_01077	SPRG_10869	A0A067CWD0	A0A067CB92	CULLIN_2 domain-containing protein; Belongs to the cullin family.	MPN domain-containing protein.	0.528
SPRG_01077	SPRG_12074	A0A067CWD0	A0A067BUZ0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-40S ribosomal protein S27a.	0.616
SPRG_01077	SPRG_13450	A0A067CWD0	A0A067C0Y9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.616
SPRG_01077	SPRG_16091	A0A067CWD0	A0A067BV80	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.616
SPRG_01077	SPRG_20603	A0A067CWD0	A0A067CHM0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.511
SPRG_01614	SPRG_00198	A0A067D4M1	A0A067CXC3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.434
SPRG_01614	SPRG_01077	A0A067D4M1	A0A067CWD0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.430
SPRG_01614	SPRG_03925	A0A067D4M1	A0A067CKS2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Lipase_3 domain-containing protein.	0.401
SPRG_01614	SPRG_06789	A0A067D4M1	A0A067CL34	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.639
SPRG_01614	SPRG_08828	A0A067D4M1	A0A067CH64	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.445
SPRG_01614	SPRG_10002	A0A067D4M1	A0A067BXH4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.401
SPRG_01614	SPRG_10885	A0A067D4M1	A0A067C0P5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.812
SPRG_01614	SPRG_10888	A0A067D4M1	A0A067CC35	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.812