(38 nodes) protein-DNA complex assembly network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_01251	Uncharacterized protein. (1214 aa)
	SPRG_18030	Uncharacterized protein. (688 aa)
	SPRG_16883	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	SPRG_16405	RECA_2 domain-containing protein. (284 aa)
	SPRG_17302	Uncharacterized protein. (188 aa)
	SPRG_14952	CDT1 domain-containing protein. (148 aa)
	SPRG_17010	Uncharacterized protein. (88 aa)
	SPRG_16023	Histone H2B; Belongs to the histone H2B family. (120 aa)
	SPRG_11835	Mis18 domain-containing protein. (175 aa)
	SPRG_15262	TFIID_20kDa domain-containing protein. (128 aa)
	SPRG_10716	Uncharacterized protein. (230 aa)
	SPRG_10374	Uncharacterized protein. (230 aa)
	SPRG_10247	Uncharacterized protein. (428 aa)
	SPRG_20809	Uncharacterized protein. (705 aa)
	SPRG_07338	Uncharacterized protein; Belongs to the RecA family. (376 aa)
	SPRG_20013	TFIIB-type domain-containing protein. (308 aa)
	SPRG_05718	TFIIB-type domain-containing protein. (549 aa)
	SPRG_09600	CDT1 domain-containing protein. (337 aa)
	SPRG_05398	TAFII28 domain-containing protein. (203 aa)
	SPRG_20377	SHNi-TPR domain-containing protein. (391 aa)
	SPRG_05875	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (323 aa)
	SPRG_07885	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
	SPRG_06969	Histone H2B; Belongs to the histone H2B family. (119 aa)
	SPRG_04088	Uncharacterized protein. (758 aa)
	SPRG_04138	Uncharacterized protein. (417 aa)
	SPRG_02881	SANT domain-containing protein. (690 aa)
	SPRG_19617	DUF3591 domain-containing protein. (1189 aa)
	SPRG_02355	Uncharacterized protein. (592 aa)
	SPRG_19960	Uncharacterized protein. (412 aa)
	SPRG_02496	RECA_2 domain-containing protein. (336 aa)
	SPRG_01732	TAFII55_N domain-containing protein. (365 aa)
	SPRG_06573	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	SPRG_01057	WD_REPEATS_REGION domain-containing protein. (557 aa)
	SPRG_01171	Bromo domain-containing protein. (1431 aa)
	SPRG_04139	Uncharacterized protein. (904 aa)
	SPRG_02188	C2H2-type domain-containing protein. (362 aa)
	SPRG_18972	Rod_C domain-containing protein. (830 aa)
	SPRG_00221	Uncharacterized protein. (761 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00221	SPRG_01057	A0A067D8N6	A0A067CWA7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.591
SPRG_00221	SPRG_01171	A0A067D8N6	A0A067CWM4	Uncharacterized protein.	Bromo domain-containing protein.	0.457
SPRG_00221	SPRG_02188	A0A067D8N6	A0A067D3R4	Uncharacterized protein.	C2H2-type domain-containing protein.	0.537
SPRG_00221	SPRG_04138	A0A067D8N6	A0A067CNW8	Uncharacterized protein.	Uncharacterized protein.	0.511
SPRG_00221	SPRG_04139	A0A067D8N6	A0A067CWN2	Uncharacterized protein.	Uncharacterized protein.	0.511
SPRG_00221	SPRG_05875	A0A067D8N6	A0A067CF08	Uncharacterized protein.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.483
SPRG_00221	SPRG_06969	A0A067D8N6	A0A067CKS0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.877
SPRG_00221	SPRG_10247	A0A067D8N6	A0A067C2J8	Uncharacterized protein.	Uncharacterized protein.	0.459
SPRG_00221	SPRG_10374	A0A067D8N6	A0A067C1A2	Uncharacterized protein.	Uncharacterized protein.	0.720
SPRG_00221	SPRG_10716	A0A067D8N6	A0A067BZQ2	Uncharacterized protein.	Uncharacterized protein.	0.720
SPRG_00221	SPRG_15262	A0A067D8N6	A0A067BZ63	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.457
SPRG_00221	SPRG_16023	A0A067D8N6	A0A067BWM7	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.877
SPRG_00221	SPRG_17302	A0A067D8N6	A0A067BKM7	Uncharacterized protein.	Uncharacterized protein.	0.511
SPRG_00221	SPRG_19617	A0A067D8N6	A0A067CPC9	Uncharacterized protein.	DUF3591 domain-containing protein.	0.457
SPRG_00221	SPRG_20013	A0A067D8N6	A0A067CDH9	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.537
SPRG_00221	SPRG_20377	A0A067D8N6	A0A067CF06	Uncharacterized protein.	SHNi-TPR domain-containing protein.	0.807
SPRG_01057	SPRG_00221	A0A067CWA7	A0A067D8N6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.591
SPRG_01057	SPRG_04088	A0A067CWA7	A0A067CLS2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.971
SPRG_01057	SPRG_05875	A0A067CWA7	A0A067CF08	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.416
SPRG_01057	SPRG_06573	A0A067CWA7	A0A067CU13	WD_REPEATS_REGION domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.591