(49 nodes) Catalytic step 2 spliceosome network (Saprolegnia parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_06610	Uncharacterized protein. (223 aa)
	SPRG_18352	Small nuclear ribonucleoprotein Sm D3. (91 aa)
	SPRG_17726	Ubiquitin-like domain-containing protein. (132 aa)
	SPRG_17087	MI domain-containing protein. (303 aa)
	SPRG_16626	WD_REPEATS_REGION domain-containing protein. (313 aa)
	SPRG_14777	Uncharacterized protein. (424 aa)
	SPRG_21385	Uncharacterized protein. (1042 aa)
	SPRG_14731	Uncharacterized protein. (447 aa)
	SPRG_17960	WD_REPEATS_REGION domain-containing protein. (92 aa)
	SPRG_11707	Uncharacterized protein. (236 aa)
	SPRG_12171	Uncharacterized protein. (608 aa)
	SPRG_15839	Sm domain-containing protein. (91 aa)
	SPRG_10512	Uncharacterized protein. (1472 aa)
	SPRG_21050	MI domain-containing protein. (623 aa)
	SPRG_11492	Small nuclear ribonucleoprotein G. (76 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	SPRG_13551	PSP domain-containing protein. (521 aa)
	SPRG_09757	WD_REPEATS_REGION domain-containing protein. (315 aa)
	SPRG_10321	WD_REPEATS_REGION domain-containing protein. (467 aa)
	SPRG_09658	Small nuclear ribonucleoprotein Sm D3. (122 aa)
	SPRG_07720	Small nuclear ribonucleoprotein Sm D3. (134 aa)
	SPRG_11089	Pre-mRNA-processing-splicing factor 8. (2381 aa)
	SPRG_11114	TPR_REGION domain-containing protein. (658 aa)
	SPRG_05695	Small nuclear ribonucleoprotein F. (83 aa)
	SPRG_06763	Splicing factor 3B subunit 1. (1235 aa)
	SPRG_08731	WD_REPEATS_REGION domain-containing protein. (538 aa)
	SPRG_05192	Uncharacterized protein. (308 aa)
	SPRG_08180	PPIase cyclophilin-type domain-containing protein. (487 aa)
	SPRG_20529	PPIase cyclophilin-type domain-containing protein. (189 aa)
	SPRG_19587	Uncharacterized protein. (104 aa)
	SPRG_03956	Uncharacterized protein. (210 aa)
	SPRG_04059	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (157 aa)
	SPRG_04556	MPN domain-containing protein. (287 aa)
	SPRG_02956	WD_REPEATS_REGION domain-containing protein. (491 aa)
	SPRG_04002	Uncharacterized protein. (1265 aa)
	SPRG_02016	Uncharacterized protein. (253 aa)
	SPRG_05428	PRP1_N domain-containing protein. (952 aa)
	SPRG_02015	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	SPRG_03049	Tr-type G domain-containing protein. (1005 aa)
	SPRG_01603	Uncharacterized protein. (222 aa)
	SPRG_03552	WD_REPEATS_REGION domain-containing protein. (369 aa)
	SPRG_19035	WD_REPEATS_REGION domain-containing protein. (394 aa)
	SPRG_00891	Uncharacterized protein. (142 aa)
	SPRG_00106	Pre-mRNA branch site p14-like protein. (121 aa)
	SPRG_19174	Uncharacterized protein. (823 aa)
	SPRG_01820	Uncharacterized protein. (562 aa)
	SPRG_01512	TAZ-type domain-containing protein. (795 aa)
	SPRG_00491	Small nuclear ribonucleoprotein Sm D2. (107 aa)
	SPRG_00428	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	SPRG_00106	A0A067C375	A0A067D1A1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA branch site p14-like protein.	0.796
LSM3	SPRG_00491	A0A067C375	A0A067D9M7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.990
LSM3	SPRG_00891	A0A067C375	A0A067CZZ3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.990
LSM3	SPRG_01512	A0A067C375	A0A067D6Q5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	TAZ-type domain-containing protein.	0.832
LSM3	SPRG_02015	A0A067C375	A0A067CRV3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	SPRG_02016	A0A067C375	A0A067CRA7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.991
LSM3	SPRG_02956	A0A067C375	A0A067CP46	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.431
LSM3	SPRG_03049	A0A067C375	A0A067CTK3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.991
LSM3	SPRG_03552	A0A067C375	A0A067CXW6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.496
LSM3	SPRG_04556	A0A067C375	A0A067CN51	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.926
LSM3	SPRG_05192	A0A067C375	A0A067CHK6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.832
LSM3	SPRG_05428	A0A067C375	A0A067CRR5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP1_N domain-containing protein.	0.966
LSM3	SPRG_05695	A0A067C375	A0A067CDC5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein F.	0.991
LSM3	SPRG_06763	A0A067C375	A0A067CFU9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 1.	0.923
LSM3	SPRG_07720	A0A067C375	A0A067C915	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.950
LSM3	SPRG_09658	A0A067C375	A0A067C6P1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.950
LSM3	SPRG_10321	A0A067C375	A0A067C5S6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.496
LSM3	SPRG_10512	A0A067C375	A0A067BZ09	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.431
LSM3	SPRG_11089	A0A067C375	A0A067CAT5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor 8.	0.926
LSM3	SPRG_11114	A0A067C375	A0A067CAY8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	TPR_REGION domain-containing protein.	0.967