17 items (Saprolegnia parasitica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPRG_17525	Uncharacterized protein. (375 aa)
	SPRG_16553	ThiF domain-containing protein. (195 aa)
	SPRG_12020	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family. (978 aa)
	SPRG_09952	ThiF domain-containing protein. (424 aa)
	SPRG_09911	ThiF domain-containing protein. (374 aa)
	SPRG_11296	E2_bind domain-containing protein. (458 aa)
	SPRG_09906	ThiF domain-containing protein. (386 aa)
	SPRG_21242	NEDD8-activating enzyme E1 regulatory subunit. (508 aa)
	SPRG_20000	ThiF domain-containing protein. (320 aa)
	SPRG_09698	Uncharacterized protein. (377 aa)
	SPRG_05179	Rhodanese domain-containing protein. (391 aa)
	SPRG_07085	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (585 aa)
	SPRG_06486	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (661 aa)
	SPRG_05913	ThiF domain-containing protein. (578 aa)
	SPRG_05912	ThiF domain-containing protein. (129 aa)
	SPRG_00900	ThiF domain-containing protein. (341 aa)
	SPRG_00337	Uncharacterized protein. (1140 aa)

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRG_00337	SPRG_05913	A0A067D1V7	A0A067CRE0	Uncharacterized protein.	ThiF domain-containing protein.	0.900
SPRG_00337	SPRG_06486	A0A067D1V7	A0A067CQ32	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.637
SPRG_00337	SPRG_11296	A0A067D1V7	A0A067C3Z6	Uncharacterized protein.	E2_bind domain-containing protein.	0.679
SPRG_00337	SPRG_12020	A0A067D1V7	A0A067BX83	Uncharacterized protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.906
SPRG_00900	SPRG_06486	A0A067CVW3	A0A067CQ32	ThiF domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.554
SPRG_00900	SPRG_11296	A0A067CVW3	A0A067C3Z6	ThiF domain-containing protein.	E2_bind domain-containing protein.	0.568
SPRG_05179	SPRG_09952	A0A067CL97	A0A067BX96	Rhodanese domain-containing protein.	ThiF domain-containing protein.	0.434
SPRG_05179	SPRG_11296	A0A067CL97	A0A067C3Z6	Rhodanese domain-containing protein.	E2_bind domain-containing protein.	0.488
SPRG_05912	SPRG_06486	A0A067CS73	A0A067CQ32	ThiF domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.637
SPRG_05912	SPRG_11296	A0A067CS73	A0A067C3Z6	ThiF domain-containing protein.	E2_bind domain-containing protein.	0.679
SPRG_05913	SPRG_00337	A0A067CRE0	A0A067D1V7	ThiF domain-containing protein.	Uncharacterized protein.	0.900
SPRG_05913	SPRG_06486	A0A067CRE0	A0A067CQ32	ThiF domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.637
SPRG_05913	SPRG_11296	A0A067CRE0	A0A067C3Z6	ThiF domain-containing protein.	E2_bind domain-containing protein.	0.679
SPRG_05913	SPRG_12020	A0A067CRE0	A0A067BX83	ThiF domain-containing protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.900
SPRG_06486	SPRG_00337	A0A067CQ32	A0A067D1V7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Uncharacterized protein.	0.637
SPRG_06486	SPRG_00900	A0A067CQ32	A0A067CVW3	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	ThiF domain-containing protein.	0.554
SPRG_06486	SPRG_05912	A0A067CQ32	A0A067CS73	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	ThiF domain-containing protein.	0.637
SPRG_06486	SPRG_05913	A0A067CQ32	A0A067CRE0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	ThiF domain-containing protein.	0.637
SPRG_06486	SPRG_09698	A0A067CQ32	A0A067CEI0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Uncharacterized protein.	0.637
SPRG_06486	SPRG_09906	A0A067CQ32	A0A067C566	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	ThiF domain-containing protein.	0.554