(6 nodes) Mixed, incl. SPOR domain, and Regulation of protein transport network (Bartonella clarridgeiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BARCL_0226	Homologs of previously reported genes of unknown function. (474 aa)
	BARCL_0239	AsmA family. (626 aa)
	BARCL_0256	Fragment of Bartonella effector protein (Bep); Gene remnant; factor. (440 aa)
	BARCL_0545	Homologs of previously reported genes of unknown function. (325 aa)
	BARCL_0670	Homologs of previously reported genes of unknown function. (860 aa)
	BARCL_1020	Homologs of previously reported genes of unknown function. (951 aa)

Your Current Organism:

Bartonella clarridgeiae

NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BARCL_0226	BARCL_0239	Homologs of previously reported genes of unknown function.	AsmA family.	0.800
BARCL_0226	BARCL_0256	Homologs of previously reported genes of unknown function.	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	0.748
BARCL_0226	BARCL_0545	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.769
BARCL_0226	BARCL_0670	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.774
BARCL_0226	BARCL_1020	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.742
BARCL_0239	BARCL_0226	AsmA family.	Homologs of previously reported genes of unknown function.	0.800
BARCL_0239	BARCL_0256	AsmA family.	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	0.768
BARCL_0239	BARCL_0545	AsmA family.	Homologs of previously reported genes of unknown function.	0.774
BARCL_0239	BARCL_0670	AsmA family.	Homologs of previously reported genes of unknown function.	0.770
BARCL_0239	BARCL_1020	AsmA family.	Homologs of previously reported genes of unknown function.	0.770
BARCL_0256	BARCL_0226	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	Homologs of previously reported genes of unknown function.	0.748
BARCL_0256	BARCL_0239	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	AsmA family.	0.768
BARCL_0256	BARCL_0545	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	Homologs of previously reported genes of unknown function.	0.773
BARCL_0256	BARCL_0670	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	Homologs of previously reported genes of unknown function.	0.773
BARCL_0256	BARCL_1020	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	Homologs of previously reported genes of unknown function.	0.774
BARCL_0545	BARCL_0226	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.769
BARCL_0545	BARCL_0239	Homologs of previously reported genes of unknown function.	AsmA family.	0.774
BARCL_0545	BARCL_0256	Homologs of previously reported genes of unknown function.	Fragment of Bartonella effector protein (Bep); Gene remnant; factor.	0.773
BARCL_0545	BARCL_0670	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.773
BARCL_0545	BARCL_1020	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.774