27 items (Bartonella clarridgeiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BARCL_0037	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (825 aa)
	batS	Two-component sensor kinase BatS. (590 aa)
	batR	Transcriptional regulator BatR. (240 aa)
	BARCL_0294	Homologs of previously reported genes of unknown function. (212 aa)
	ctrA	Cell cycle transcriptional regulator CtrA. (233 aa)
	envZ	Sensor histidine kinase. (446 aa)
	ompR	Transcriptional regulator OmpR. (233 aa)
	trkH	Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (464 aa)
	BARCL_0362	Homologs of previously reported genes of unknown function. (961 aa)
	BARCL_0383	Homologs of previously reported genes of unknown function. (77 aa)
	feuP	Two-component system regulatory protein. (222 aa)
	feuQ	Sensor histidine kinase. (469 aa)
	BARCL_0386	Protein of unknown function; No homology to any previously reported sequences. (62 aa)
	BARCL_0393	Two-component response regulator. (228 aa)
	BARCL_0394	Sensor histidine kinase. (463 aa)
	BARCL_0398	Two-component sensor histidine kinase. (769 aa)
	BARCL_0601	Homologs of previously reported genes of unknown function. (159 aa)
	BARCL_0602	Two-component system, sensor histidine kinase. (756 aa)
	BARCL_0603	Two-component system, response regulator. (452 aa)
	trkA	Potassium uptake protein TrkA. (458 aa)
	BARCL_0605	Homologs of previously reported genes of unknown function. (268 aa)
	BARCL_0700	Sensor histidine kinase. (854 aa)
	divK	Two-component system response regulator. (121 aa)
	BARCL_0849	Response regulator. (120 aa)
	BARCL_1161	Two-component system response regulator. (264 aa)
	mtrA	Two-component response regulator. (227 aa)
	BARCL_1336	Homologs of previously reported genes of unknown function. (185 aa)

Your Current Organism:

Bartonella clarridgeiae

NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARCL_0037	BARCL_0294	BARCL_0037	BARCL_0294	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.665
BARCL_0037	BARCL_0362	BARCL_0037	BARCL_0362	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.921
BARCL_0037	BARCL_0383	BARCL_0037	BARCL_0383	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.871
BARCL_0037	BARCL_0393	BARCL_0037	BARCL_0393	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component response regulator.	0.887
BARCL_0037	BARCL_0394	BARCL_0037	BARCL_0394	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sensor histidine kinase.	0.542
BARCL_0037	BARCL_0398	BARCL_0037	BARCL_0398	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component sensor histidine kinase.	0.862
BARCL_0037	BARCL_0603	BARCL_0037	BARCL_0603	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component system, response regulator.	0.665
BARCL_0037	BARCL_0700	BARCL_0037	BARCL_0700	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sensor histidine kinase.	0.996
BARCL_0037	BARCL_0849	BARCL_0037	BARCL_0849	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Response regulator.	0.847
BARCL_0037	BARCL_1161	BARCL_0037	BARCL_1161	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component system response regulator.	0.880
BARCL_0037	batR	BARCL_0037	BARCL_0061	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transcriptional regulator BatR.	0.906
BARCL_0037	batS	BARCL_0037	BARCL_0060	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component sensor kinase BatS.	0.606
BARCL_0037	ctrA	BARCL_0037	BARCL_0295	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Cell cycle transcriptional regulator CtrA.	0.912
BARCL_0037	divK	BARCL_0037	BARCL_0707	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component system response regulator.	0.956
BARCL_0037	envZ	BARCL_0037	BARCL_0329	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sensor histidine kinase.	0.631
BARCL_0037	feuP	BARCL_0037	BARCL_0384	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component system regulatory protein.	0.907
BARCL_0037	feuQ	BARCL_0037	BARCL_0385	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sensor histidine kinase.	0.656
BARCL_0037	mtrA	BARCL_0037	BARCL_1335	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Two-component response regulator.	0.892
BARCL_0037	ompR	BARCL_0037	BARCL_0330	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transcriptional regulator OmpR.	0.915
BARCL_0037	trkA	BARCL_0037	BARCL_0604	Putative sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Potassium uptake protein TrkA.	0.518