29 items (Bartonella clarridgeiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	batS	Two-component sensor kinase BatS. (590 aa)
	batR	Transcriptional regulator BatR. (240 aa)
	dnaA	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (520 aa)
	BARCL_0178	Homologs of previously reported genes of unknown function. (165 aa)
	BARCL_0184	Periplasmic phosphate binding protein. (348 aa)
	BARCL_0234	Glutamine synthetase-related protein. (467 aa)
	BARCL_0275	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (399 aa)
	BARCL_0294	Homologs of previously reported genes of unknown function. (212 aa)
	ctrA	Cell cycle transcriptional regulator CtrA. (233 aa)
	envZ	Sensor histidine kinase. (446 aa)
	ompR	Transcriptional regulator OmpR. (233 aa)
	htrA	Serine protease; Belongs to the peptidase S1C family. (501 aa)
	BARCL_0398	Two-component sensor histidine kinase. (769 aa)
	motA	Chemotaxis protein motA (Motility protein A). (291 aa)
	BARCL_0602	Two-component system, sensor histidine kinase. (756 aa)
	BARCL_0603	Two-component system, response regulator. (452 aa)
	BARCL_0617	Glutamine synthetase I (fragment). (248 aa)
	glnA	Glutamine synthetase I. (469 aa)
	glnB	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (114 aa)
	BARCL_0700	Sensor histidine kinase. (854 aa)
	divK	Two-component system response regulator. (121 aa)
	cox	Cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. (365 aa)
	BARCL_0849	Response regulator. (120 aa)
	gltI	Amino-acid ABC transporter binding protein. (301 aa)
	gltJ	Glutamate/aspartate transport system permease protein GltJ. (250 aa)
	gltK	Glutamate/aspartate transport system permease protein gltK. (178 aa)
	gltL	Glutamate /aspartate transport ATP-binding protein. (249 aa)
	tolC	Outer membrane protein. (401 aa)
	htrA-3	Serine protease; Belongs to the peptidase S1C family. (496 aa)

Your Current Organism:

Bartonella clarridgeiae

NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARCL_0178	BARCL_0398	BARCL_0178	BARCL_0398	Homologs of previously reported genes of unknown function.	Two-component sensor histidine kinase.	0.651
BARCL_0178	BARCL_0700	BARCL_0178	BARCL_0700	Homologs of previously reported genes of unknown function.	Sensor histidine kinase.	0.776
BARCL_0178	batS	BARCL_0178	BARCL_0060	Homologs of previously reported genes of unknown function.	Two-component sensor kinase BatS.	0.610
BARCL_0178	cox	BARCL_0178	BARCL_0830	Homologs of previously reported genes of unknown function.	Cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.	0.700
BARCL_0178	envZ	BARCL_0178	BARCL_0329	Homologs of previously reported genes of unknown function.	Sensor histidine kinase.	0.610
BARCL_0184	BARCL_0700	BARCL_0184	BARCL_0700	Periplasmic phosphate binding protein.	Sensor histidine kinase.	0.430
BARCL_0234	BARCL_0617	BARCL_0234	BARCL_0617	Glutamine synthetase-related protein.	Glutamine synthetase I (fragment).	0.913
BARCL_0234	BARCL_0700	BARCL_0234	BARCL_0700	Glutamine synthetase-related protein.	Sensor histidine kinase.	0.516
BARCL_0234	glnA	BARCL_0234	BARCL_0652	Glutamine synthetase-related protein.	Glutamine synthetase I.	0.912
BARCL_0275	BARCL_0700	BARCL_0275	BARCL_0700	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Sensor histidine kinase.	0.651
BARCL_0275	batR	BARCL_0275	BARCL_0061	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Transcriptional regulator BatR.	0.454
BARCL_0275	motA	BARCL_0275	BARCL_0457	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Chemotaxis protein motA (Motility protein A).	0.921
BARCL_0294	BARCL_0398	BARCL_0294	BARCL_0398	Homologs of previously reported genes of unknown function.	Two-component sensor histidine kinase.	0.566
BARCL_0294	BARCL_0700	BARCL_0294	BARCL_0700	Homologs of previously reported genes of unknown function.	Sensor histidine kinase.	0.962
BARCL_0294	BARCL_0849	BARCL_0294	BARCL_0849	Homologs of previously reported genes of unknown function.	Response regulator.	0.959
BARCL_0294	batR	BARCL_0294	BARCL_0061	Homologs of previously reported genes of unknown function.	Transcriptional regulator BatR.	0.503
BARCL_0294	batS	BARCL_0294	BARCL_0060	Homologs of previously reported genes of unknown function.	Two-component sensor kinase BatS.	0.411
BARCL_0294	ctrA	BARCL_0294	BARCL_0295	Homologs of previously reported genes of unknown function.	Cell cycle transcriptional regulator CtrA.	0.958
BARCL_0294	divK	BARCL_0294	BARCL_0707	Homologs of previously reported genes of unknown function.	Two-component system response regulator.	0.479
BARCL_0294	ompR	BARCL_0294	BARCL_0330	Homologs of previously reported genes of unknown function.	Transcriptional regulator OmpR.	0.503