STRINGSTRING
ADU21210.1 ADU21210.1 recG recG ADU22843.1 ADU22843.1 ADU22765.1 ADU22765.1 ADU22719.1 ADU22719.1 ADU22588.1 ADU22588.1 ADU22500.1 ADU22500.1 mutL mutL mutS2 mutS2 ADU22294.1 ADU22294.1 ADU22254.1 ADU22254.1 ADU22196.1 ADU22196.1 ftsH ftsH ADU22146.1 ADU22146.1 ADU22140.1 ADU22140.1 ADU22060.1 ADU22060.1 ADU22024.1 ADU22024.1 ADU21995.1 ADU21995.1 ADU21723.1 ADU21723.1 ADU21593.1 ADU21593.1 ADU21453.1 ADU21453.1 ADU21307.1 ADU21307.1 ADU21246.1 ADU21246.1 ADU21226.1 ADU21226.1 ADU21194.1 ADU21194.1 ADU21021.1 ADU21021.1 uvrA uvrA uvrB uvrB clpB clpB ADU20578.1 ADU20578.1 ADU23677.1 ADU23677.1 smc smc ADU23467.1 ADU23467.1 ADU23300.1 ADU23300.1 htpG htpG ADU23142.1 ADU23142.1 ADU23140.1 ADU23140.1 recD2 recD2 ruvA ruvA ruvB ruvB ychF ychF ADU22988.1 ADU22988.1 lon lon
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADU21210.1KEGG: dat:HRM2_17350 hypothetical protein. (486 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (678 aa)
ADU22843.1TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: str:Sterm_1601 calcium-translocating P-type ATPase, PMCA-type; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. (921 aa)
ADU22765.1KEGG: acl:ACL_1009 hypothetical protein. (526 aa)
ADU22719.1PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cth:Cthe_1183 ATPase. (311 aa)
ADU22588.1Manually curated; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: eel:EUBELI_00578 hypothetical protein; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase. (689 aa)
ADU22500.1Hypothetical protein; KEGG: cbe:Cbei_4802 heavy metal translocating P-type ATPase. (799 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (693 aa)
mutS2MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (802 aa)
ADU22294.1AAA ATPase central domain protein; KEGG: ctc:CTC01048 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (426 aa)
ADU22254.1ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (272 aa)
ADU22196.1PFAM: ATPase associated with various cellular activities AAA_3; KEGG: cpy:Cphy_3709 ATPase. (322 aa)
ftsHATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (663 aa)
ADU22146.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (458 aa)
ADU22140.1PFAM: UvrD/REP helicase; KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA. (780 aa)
ADU22060.1KEGG: cbf:CLI_0611 calcium-translocating P-type ATPase, PMCA-type; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. (871 aa)
ADU22024.1PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cbe:Cbei_2748 ATPase. (368 aa)
ADU21995.1PFAM: Fibronectin type III domain protein; KEGG: avi:Avi_5260 hypothetical protein. (537 aa)
ADU21723.1PFAM: UvrD/REP helicase; KEGG: tde:TDE1620 hypothetical protein. (635 aa)
ADU21593.1KEGG: cce:Ccel_0234 cadmium-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase. (617 aa)
ADU21453.1KEGG: cth:Cthe_0312 ATPase AAA-2; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp ATPase-like; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (783 aa)
ADU21307.1KEGG: mpe:MYPE5800 AAA family ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (714 aa)
ADU21246.1PFAM: ATP-binding region ATPase domain protein; KEGG: aba:Acid345_4266 hypothetical protein. (488 aa)
ADU21226.1KEGG: dat:HRM2_17350 hypothetical protein. (543 aa)
ADU21194.1Hypothetical protein; KEGG: ath:AT5G09530 hydroxyproline-rich glycoprotein family protein. (387 aa)
ADU21021.1KEGG: cth:Cthe_0093 septum site-determining protein MinD. (245 aa)
uvrAExcinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (656 aa)
clpBATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (874 aa)
ADU20578.1KEGG: aoe:Clos_2868 cobyrinic acid ac-diamide synthase. (259 aa)
ADU23677.1KEGG: fma:FMG_1620 chromosome partitioning protein ParA-like protein. (265 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1191 aa)
ADU23467.1KEGG: ere:EUBREC_1422 hypothetical protein; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase. (313 aa)
ADU23300.1PFAM: ATPase associated with various cellular activities AAA_5; KEGG: ele:Elen_2494 ATPase associated with various cellular activities AAA_5. (507 aa)
htpGHeat shock protein Hsp90-like protein; Molecular chaperone. Has ATPase activity. (630 aa)
ADU23142.1Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. (491 aa)
ADU23140.1ATPase AAA-2 domain protein; KEGG: eel:EUBELI_00691 ATP-dependent Clp protease ATP-binding subunit ClpC; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (765 aa)
recD2Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (752 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (345 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (364 aa)
ADU22988.1KEGG: dat:HRM2_17350 hypothetical protein. (544 aa)
lonATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (808 aa)
Your Current Organism:
Ruminococcus albus 7 DSM 20455
NCBI taxonomy Id: 697329
Other names: R. albus 7 = DSM 20455, Ruminococcus albus 7, Ruminococcus albus 7 = DSM 20455, Ruminococcus albus DSM 20455, Ruminococcus albus DSM 20455 = 7
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