STRINGSTRING
ADU21654.1 ADU21654.1 ADU21726.1 ADU21726.1 priA priA ADU22637.1 ADU22637.1 recG recG ADU23421.1 ADU23421.1 mfd mfd ADU23702.1 ADU23702.1 uvrB uvrB ADU21614.1 ADU21614.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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experimentally determined
Predicted Interactions
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gene co-occurrence
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textmining
co-expression
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Your Input:
ADU21654.1Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; PFAM: helicase domain protein; KEGG: amt:Amet_1662 CRISPR-associated helicase Cas3; SMART: helicase domain protein; metal-dependent phosphohydrolase HD region. (782 aa)
ADU21726.1KEGG: mrb:Mrub_0445 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase. (1031 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (817 aa)
ADU22637.1KEGG: afn:Acfer_0797 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (755 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (678 aa)
ADU23421.1TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: cpy:Cphy_1154 ATP-dependent DNA helicase RecQ; SMART: helicase domain protein; DEAD-like helicase; HRDC domain protein. (738 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1156 aa)
ADU23702.1DNA mismatch repair protein MutS domain protein; KEGG: ere:EUBREC_3564 possible adenine-specific DNA methylase; PFAM: DNA mismatch repair protein MutS domain protein; SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (3387 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (656 aa)
ADU21614.1Helicase domain protein; KEGG: ldb:Ldb1232 putative helicase; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase. (1076 aa)
Your Current Organism:
Ruminococcus albus 7 DSM 20455
NCBI taxonomy Id: 697329
Other names: R. albus 7 = DSM 20455, Ruminococcus albus 7, Ruminococcus albus 7 = DSM 20455, Ruminococcus albus DSM 20455, Ruminococcus albus DSM 20455 = 7
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