76 items (Penicillium decumbens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6NRW5	HTH TFE/IIEalpha-type domain-containing protein. (454 aa)
	A0A1V6NS44	Acyl_transf_3 domain-containing protein. (480 aa)
	A0A1V6NUL3	Uncharacterized protein. (860 aa)
	A0A1V6NV44	Uncharacterized protein. (681 aa)
	A0A1V6NZ70	CID domain-containing protein. (615 aa)
	A0A1V6NZA3	Uncharacterized protein. (293 aa)
	A0A1V6NZJ3	Uncharacterized protein. (351 aa)
	A0A1V6NZQ1	Rtt106 domain-containing protein. (457 aa)
	A0A1V6P042	Uncharacterized protein. (323 aa)
	A0A1V6P084	BTP domain-containing protein. (216 aa)
	A0A1V6P0P2	Protein kinase domain-containing protein. (519 aa)
	A0A1V6P0R0	Uncharacterized protein. (1192 aa)
	A0A1V6P110	TAFII55_N domain-containing protein. (464 aa)
	A0A1V6P601	Uncharacterized protein. (636 aa)
	A0A1V6P684	Uncharacterized protein. (77 aa)
	A0A1V6P6E7	Uncharacterized protein. (637 aa)
	A0A1V6P6L5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1255 aa)
	A0A1V6P6W4	Uncharacterized protein. (730 aa)
	A0A1V6P705	TAFII28 domain-containing protein. (348 aa)
	A0A1V6P7G5	Zn(2)-C6 fungal-type domain-containing protein. (625 aa)
	A0A1V6P7H0	RPOLD domain-containing protein. (331 aa)
	A0A1V6P7H4	TAF domain-containing protein. (444 aa)
	A0A1V6P7M4	HMG box domain-containing protein. (277 aa)
	A0A1V6P853	PCI domain-containing protein. (454 aa)
	A0A1V6P8A8	WD_REPEATS_REGION domain-containing protein. (742 aa)
	A0A1V6P8J1	Uncharacterized protein. (158 aa)
	A0A1V6P8R0	Protein kinase domain-containing protein. (701 aa)
	A0A1V6P8U2	Uncharacterized protein. (826 aa)
	A0A1V6P9Z6	Uncharacterized protein. (1651 aa)
	A0A1V6PA88	Uncharacterized protein. (244 aa)
	A0A1V6PA98	BHLH domain-containing protein. (253 aa)
	A0A1V6PAD5	Uncharacterized protein. (815 aa)
	A0A1V6PAH0	Uncharacterized protein. (351 aa)
	A0A1V6PAI8	Uncharacterized protein. (1244 aa)
	A0A1V6PAW6	CBFD_NFYB_HMF domain-containing protein. (142 aa)
	A0A1V6PAZ4	Fungal_trans domain-containing protein. (596 aa)
	A0A1V6PBA8	Uncharacterized protein. (2333 aa)
	A0A1V6PBE3	Uncharacterized protein. (417 aa)
	A0A1V6PCZ0	Uncharacterized protein. (1103 aa)
	A0A1V6PDB0	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (753 aa)
	A0A1V6PDK3	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (293 aa)
	A0A1V6PE33	Uncharacterized protein. (581 aa)
	A0A1V6PE96	CDC73_C domain-containing protein. (885 aa)
	A0A1V6PFN0	UvrD-like helicase ATP-binding domain-containing protein. (2168 aa)
	A0A1V6PFT2	RRM domain-containing protein. (833 aa)
	A0A1V6PG46	Uncharacterized protein. (262 aa)
	A0A1V6PGN9	TFIIB-type domain-containing protein. (349 aa)
	A0A1V6PH27	Uncharacterized protein. (130 aa)
	A0A1V6PHM7	Uncharacterized protein. (369 aa)
	A0A1V6PI50	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (236 aa)
	A0A1V6PIJ2	Uncharacterized protein. (303 aa)
	A0A1V6PIM8	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	A0A1V6PIU4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A0A1V6PIV8	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1411 aa)
	A0A1V6PIY9	HTH myb-type domain-containing protein. (913 aa)
	A0A1V6PJ96	Uncharacterized protein. (868 aa)
	A0A1V6PJL1	Uncharacterized protein. (347 aa)
	A0A1V6PJR9	Uncharacterized protein. (463 aa)
	A0A1V6PJX3	TFIID_20kDa domain-containing protein. (588 aa)
	A0A1V6PKQ5	Uncharacterized protein. (341 aa)
	A0A1V6PKT0	RNase_PH domain-containing protein. (267 aa)
	A0A1V6PL88	Uncharacterized protein. (1769 aa)
	A0A1V6PMM2	RNA_pol_L_2 domain-containing protein. (192 aa)
	A0A1V6PMM8	DUF4211 domain-containing protein. (575 aa)
	A0A1V6PMU7	Uncharacterized protein. (376 aa)
	A0A1V6PMZ4	RAI1 domain-containing protein. (369 aa)
	A0A1V6PNC0	Uncharacterized protein. (567 aa)
	A0A1V6PNJ8	Uncharacterized protein. (222 aa)
	A0A1V6PP31	Uncharacterized protein. (235 aa)
	A0A1V6PPC3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1726 aa)
	A0A1V6PPI2	Uncharacterized protein. (289 aa)
	A0A1V6PPL2	Helicase ATP-binding domain-containing protein. (795 aa)
	A0A1V6NQX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (697 aa)
	A0A1V6NRB7	Uncharacterized protein. (449 aa)
	A0A1V6NRF7	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (195 aa)
	A0A1V6NRM8	DUF3591 domain-containing protein. (1122 aa)

Your Current Organism:

Penicillium decumbens

NCBI taxonomy Id: 69771
Other names: CBS 230.81, FRR 741, NRRL 741, P. decumbens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6NQX1	A0A1V6NRF7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
A0A1V6NQX1	A0A1V6NRM8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DUF3591 domain-containing protein.	0.964
A0A1V6NQX1	A0A1V6NRW5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HTH TFE/IIEalpha-type domain-containing protein.	0.993
A0A1V6NQX1	A0A1V6NS44	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Acyl_transf_3 domain-containing protein.	0.860
A0A1V6NQX1	A0A1V6NZ70	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	CID domain-containing protein.	0.626
A0A1V6NQX1	A0A1V6P042	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.627
A0A1V6NQX1	A0A1V6P110	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFII55_N domain-containing protein.	0.893
A0A1V6NQX1	A0A1V6P601	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.979
A0A1V6NQX1	A0A1V6P684	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.973
A0A1V6NQX1	A0A1V6P6L5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A1V6NQX1	A0A1V6P705	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFII28 domain-containing protein.	0.860
A0A1V6NQX1	A0A1V6P7H0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RPOLD domain-containing protein.	0.994
A0A1V6NQX1	A0A1V6P7H4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF domain-containing protein.	0.888
A0A1V6NQX1	A0A1V6P7M4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HMG box domain-containing protein.	0.609
A0A1V6NQX1	A0A1V6P8A8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	WD_REPEATS_REGION domain-containing protein.	0.888
A0A1V6NQX1	A0A1V6P8J1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.977
A0A1V6NQX1	A0A1V6P8U2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.978
A0A1V6NQX1	A0A1V6PA88	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.967
A0A1V6NQX1	A0A1V6PAD5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.999
A0A1V6NQX1	A0A1V6PAI8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.940