8 items (Penicillium decumbens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6P1W6	Uncharacterized protein. (455 aa)
	A0A1V6P7W6	SF3b1 domain-containing protein. (1224 aa)
	A0A1V6PAD0	Histone H2B; Belongs to the histone H2B family. (140 aa)
	A0A1V6PCZ0	Uncharacterized protein. (1103 aa)
	A0A1V6PF25	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (532 aa)
	A0A1V6NV99	Uncharacterized protein. (984 aa)
	A0A1V6NZ96	Uncharacterized protein. (234 aa)
	A0A1V6NZZ2	UDG domain-containing protein. (322 aa)

Your Current Organism:

Penicillium decumbens

NCBI taxonomy Id: 69771
Other names: CBS 230.81, FRR 741, NRRL 741, P. decumbens

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6NV99	A0A1V6P1W6	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A1V6NV99	A0A1V6P7W6	Uncharacterized protein.	SF3b1 domain-containing protein.	0.750
A0A1V6NV99	A0A1V6PCZ0	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A1V6NV99	A0A1V6PF25	Uncharacterized protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.534
A0A1V6P1W6	A0A1V6NV99	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A1V6P1W6	A0A1V6P7W6	Uncharacterized protein.	SF3b1 domain-containing protein.	0.530
A0A1V6P1W6	A0A1V6PAD0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.789
A0A1V6P1W6	A0A1V6PCZ0	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1V6P7W6	A0A1V6NV99	SF3b1 domain-containing protein.	Uncharacterized protein.	0.750
A0A1V6P7W6	A0A1V6P1W6	SF3b1 domain-containing protein.	Uncharacterized protein.	0.530
A0A1V6P7W6	A0A1V6PCZ0	SF3b1 domain-containing protein.	Uncharacterized protein.	0.759
A0A1V6PAD0	A0A1V6P1W6	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.789
A0A1V6PAD0	A0A1V6PCZ0	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.955
A0A1V6PCZ0	A0A1V6NV99	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A1V6PCZ0	A0A1V6P1W6	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A1V6PCZ0	A0A1V6P7W6	Uncharacterized protein.	SF3b1 domain-containing protein.	0.759
A0A1V6PCZ0	A0A1V6PAD0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.955
A0A1V6PF25	A0A1V6NV99	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Uncharacterized protein.	0.534