39 items (Penicillium decumbens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PMM2	RNA_pol_L_2 domain-containing protein. (192 aa)
	A0A1V6PMM8	DUF4211 domain-containing protein. (575 aa)
	A0A1V6PMU7	Uncharacterized protein. (376 aa)
	A0A1V6PP31	Uncharacterized protein. (235 aa)
	A0A1V6PPC3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1726 aa)
	A0A1V6PPI2	Uncharacterized protein. (289 aa)
	A0A1V6PPL2	Helicase ATP-binding domain-containing protein. (795 aa)
	A0A1V6PG46	Uncharacterized protein. (262 aa)
	A0A1V6PGN9	TFIIB-type domain-containing protein. (349 aa)
	A0A1V6P9X7	Uncharacterized protein. (521 aa)
	A0A1V6P8U2	Uncharacterized protein. (826 aa)
	A0A1V6P8J1	Uncharacterized protein. (158 aa)
	A0A1V6P8A8	WD_REPEATS_REGION domain-containing protein. (742 aa)
	A0A1V6P7H4	TAF domain-containing protein. (444 aa)
	A0A1V6P7H0	RPOLD domain-containing protein. (331 aa)
	A0A1V6P705	TAFII28 domain-containing protein. (348 aa)
	A0A1V6PA88	Uncharacterized protein. (244 aa)
	A0A1V6P6L5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1255 aa)
	A0A1V6P684	Uncharacterized protein. (77 aa)
	A0A1V6P601	Uncharacterized protein. (636 aa)
	A0A1V6P110	TAFII55_N domain-containing protein. (464 aa)
	A0A1V6P0V2	RING-type domain-containing protein. (367 aa)
	A0A1V6NV71	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (479 aa)
	A0A1V6NS44	Acyl_transf_3 domain-containing protein. (480 aa)
	A0A1V6NRW5	HTH TFE/IIEalpha-type domain-containing protein. (454 aa)
	A0A1V6NRM8	DUF3591 domain-containing protein. (1122 aa)
	A0A1V6NRF7	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (195 aa)
	A0A1V6NQX1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (697 aa)
	A0A1V6PHM7	Uncharacterized protein. (369 aa)
	A0A1V6PI50	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (236 aa)
	A0A1V6PIM8	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	A0A1V6PIU4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A0A1V6PAD5	Uncharacterized protein. (815 aa)
	A0A1V6PAI8	Uncharacterized protein. (1244 aa)
	A0A1V6PBE3	Uncharacterized protein. (417 aa)
	A0A1V6PDK3	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (293 aa)
	A0A1V6PJX3	TFIID_20kDa domain-containing protein. (588 aa)
	A0A1V6PKQ5	Uncharacterized protein. (341 aa)
	A0A1V6PL88	Uncharacterized protein. (1769 aa)

Your Current Organism:

Penicillium decumbens

NCBI taxonomy Id: 69771
Other names: CBS 230.81, FRR 741, NRRL 741, P. decumbens

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6NQX1	A0A1V6NRF7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
A0A1V6NQX1	A0A1V6NRM8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DUF3591 domain-containing protein.	0.964
A0A1V6NQX1	A0A1V6NRW5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HTH TFE/IIEalpha-type domain-containing protein.	0.993
A0A1V6NQX1	A0A1V6NS44	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Acyl_transf_3 domain-containing protein.	0.860
A0A1V6NQX1	A0A1V6NV71	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.982
A0A1V6NQX1	A0A1V6P0V2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RING-type domain-containing protein.	0.973
A0A1V6NQX1	A0A1V6P110	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFII55_N domain-containing protein.	0.893
A0A1V6NQX1	A0A1V6P601	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.979
A0A1V6NQX1	A0A1V6P684	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.973
A0A1V6NQX1	A0A1V6P6L5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
A0A1V6NQX1	A0A1V6P705	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAFII28 domain-containing protein.	0.860
A0A1V6NQX1	A0A1V6P7H0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RPOLD domain-containing protein.	0.994
A0A1V6NQX1	A0A1V6P7H4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF domain-containing protein.	0.888
A0A1V6NQX1	A0A1V6P8A8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	WD_REPEATS_REGION domain-containing protein.	0.888
A0A1V6NQX1	A0A1V6P8J1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.977
A0A1V6NQX1	A0A1V6P8U2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.978
A0A1V6NQX1	A0A1V6P9X7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.946
A0A1V6NQX1	A0A1V6PA88	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.967
A0A1V6NQX1	A0A1V6PAD5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.999
A0A1V6NQX1	A0A1V6PAI8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.940