Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CDX19551.1 | CDX28792.1 | MPLDJ20_110256 | MPLDJ20_120369 | Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Exodeoxyribonuclease III. | 0.887 |
| CDX19551.1 | CDX46439.1 | MPLDJ20_110256 | MPLDJ20_90014 | Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Exodeoxyribonuclease III Xth. | 0.901 |
| CDX25436.1 | rnd | MPLDJ20_120105 | MPLDJ20_140408 | Ribonuclease. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.965 |
| CDX25436.1 | rph | MPLDJ20_120105 | MPLDJ20_200066 | Ribonuclease. | RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.995 |
| CDX28792.1 | CDX19551.1 | MPLDJ20_120369 | MPLDJ20_110256 | Exodeoxyribonuclease III. | Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.887 |
| CDX28792.1 | CDX46439.1 | MPLDJ20_120369 | MPLDJ20_90014 | Exodeoxyribonuclease III. | Exodeoxyribonuclease III Xth. | 0.904 |
| CDX32076.1 | CDX46439.1 | MPLDJ20_150026 | MPLDJ20_90014 | Hypothetical protein; No homology to any previously reported sequences. | Exodeoxyribonuclease III Xth. | 0.513 |
| CDX33841.1 | rnr | MPLDJ20_170079 | MPLDJ20_120234 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.400 |
| CDX39499.1 | CDX46439.1 | MPLDJ20_260023 | MPLDJ20_90014 | Exodeoxyribonuclease III. | Exodeoxyribonuclease III Xth. | 0.504 |
| CDX46439.1 | CDX19551.1 | MPLDJ20_90014 | MPLDJ20_110256 | Exodeoxyribonuclease III Xth. | Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.901 |
| CDX46439.1 | CDX28792.1 | MPLDJ20_90014 | MPLDJ20_120369 | Exodeoxyribonuclease III Xth. | Exodeoxyribonuclease III. | 0.904 |
| CDX46439.1 | CDX32076.1 | MPLDJ20_90014 | MPLDJ20_150026 | Exodeoxyribonuclease III Xth. | Hypothetical protein; No homology to any previously reported sequences. | 0.513 |
| CDX46439.1 | CDX39499.1 | MPLDJ20_90014 | MPLDJ20_260023 | Exodeoxyribonuclease III Xth. | Exodeoxyribonuclease III. | 0.504 |
| rnd | CDX25436.1 | MPLDJ20_140408 | MPLDJ20_120105 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease. | 0.965 |
| rnd | rnr | MPLDJ20_140408 | MPLDJ20_120234 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.966 |
| rnd | rph | MPLDJ20_140408 | MPLDJ20_200066 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.996 |
| rnr | CDX33841.1 | MPLDJ20_120234 | MPLDJ20_170079 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.400 |
| rnr | rnd | MPLDJ20_120234 | MPLDJ20_140408 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.966 |
| rnr | rph | MPLDJ20_120234 | MPLDJ20_200066 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.995 |
| rph | CDX25436.1 | MPLDJ20_200066 | MPLDJ20_120105 | RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Ribonuclease. | 0.995 |
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