STRINGSTRING
CDX33029.1 CDX33029.1 pip pip CDX33332.1 CDX33332.1 CDX33421.1 CDX33421.1 CDX33745.1 CDX33745.1 CDX33841.1 CDX33841.1 yggV yggV rph rph CDX37516.1 CDX37516.1 CDX37649.1 CDX37649.1 CDX35634.1 CDX35634.1 CDX35788.1 CDX35788.1 CDX36277.1 CDX36277.1 deoB deoB pnp pnp CDX36842.1 CDX36842.1 CDX36938.1 CDX36938.1 CDX36971.1 CDX36971.1 CDX37009.1 CDX37009.1 codA codA CDX37701.1 CDX37701.1 CDX38463.1 CDX38463.1 ureA ureA ureB ureB ureC ureC CDX38698.1 CDX38698.1 CDX38703.1 CDX38703.1 DERA DERA deoD deoD CDX40489.1 CDX40489.1 ntaA ntaA CDX41593.1 CDX41593.1 dut dut yxeK-2 yxeK-2 CDX42086.1 CDX42086.1 CDX42370.1 CDX42370.1 CDX43015.1 CDX43015.1 CDX43135.1 CDX43135.1 CDX43636.1 CDX43636.1 Ena Ena CDX43926.1 CDX43926.1 flbT flbT CDX44134.1 CDX44134.1 CDX44391.1 CDX44391.1 cdd cdd yjgF yjgF soxA-3 soxA-3 soxA-4 soxA-4 rutE rutE CDX45467.1 CDX45467.1 xseA xseA rnhB rnhB xseB xseB rnhA rnhA CDX46577.1 CDX46577.1 CDX46581.1 CDX46581.1 CDX19684.1 CDX19684.1 xdhB xdhB msi msi lcdH lcdH CDX13028.1 CDX13028.1 allA allA rutF rutF CDX12194.1 CDX12194.1 yxeK yxeK CDX12132.1 CDX12132.1 CDX14611.1 CDX14611.1 CDX14596.1 CDX14596.1 guaD guaD rne rne rhlE-2 rhlE-2 rhlE rhlE mazG mazG CDX30712.1 CDX30712.1 CDX30001.1 CDX30001.1 CDX29971.1 CDX29971.1 CDX29563.1 CDX29563.1 CDX29551.1 CDX29551.1 CDX29288.1 CDX29288.1 CDX29202.1 CDX29202.1 CDX29022.1 CDX29022.1 CDX28780.1 CDX28780.1 surE surE CDX28578.1 CDX28578.1 ade ade rutF-2 rutF-2 CDX24824.1 CDX24824.1 CDX24813.1 CDX24813.1 laaA laaA alc alc CDX22091.1 CDX22091.1 CDX20840.1 CDX20840.1 CDX19717.1 CDX19717.1 CDX31860.1 CDX31860.1 CDX32175.1 CDX32175.1 CDX32264.1 CDX32264.1 CDX32495.1 CDX32495.1 CDX32516.1 CDX32516.1 CDX32825.1 CDX32825.1 CDX32829.1 CDX32829.1 CDX33170.1 CDX33170.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CDX33029.13-oxoadipate enol-lactonase. (270 aa)
pipProline iminopeptidase; Belongs to the peptidase S33 family. (321 aa)
CDX33332.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (130 aa)
CDX33421.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (299 aa)
CDX33745.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (113 aa)
CDX33841.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (296 aa)
yggVdITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (220 aa)
rphRNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
CDX37516.1Antibiotic biosynthesis monooxygenase. (114 aa)
CDX37649.1Xanthosine triphosphate pyrophosphatase-like protein. (527 aa)
CDX35634.1Putative antibiotic biosynthesis monooxygenase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (80 aa)
CDX35788.1Amidohydrolase 3. (554 aa)
CDX36277.1Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function. (654 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (412 aa)
pnpPolyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (716 aa)
CDX36842.1NUDIX hydrolase. (313 aa)
CDX36938.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (263 aa)
CDX36971.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (131 aa)
CDX37009.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (108 aa)
codACytosine deaminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (426 aa)
CDX37701.1N-formimino-L-glutamate deiminase. (451 aa)
CDX38463.1Phosphonate metabolism protein. (235 aa)
ureAUrease gamma subunit (Urea amidohydrolase gamma subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease gamma subunit family. (100 aa)
ureBUrease beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the urease beta subunit family. (101 aa)
ureCUrease alpha subunit (Urea amidohydrolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (570 aa)
CDX38698.1Monoxide dehydrogenase. (299 aa)
CDX38703.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (513 aa)
DERAPutative deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. (348 aa)
deoDPurine-nucleoside phosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (236 aa)
CDX40489.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (127 aa)
ntaANitrilotriacetate monooxygenase component A. (449 aa)
CDX41593.1DEAD/DEAH box helicase domain protein. (625 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (161 aa)
yxeK-2Putative monooxygenase YxeK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (452 aa)
CDX42086.13-hydroxyacyl-CoA dehydrogenase. (312 aa)
CDX42370.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (167 aa)
CDX43015.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (310 aa)
CDX43135.1Hypothetical protein; No homology to any previously reported sequences. (92 aa)
CDX43636.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (213 aa)
EnaEnamidase. (399 aa)
CDX43926.1Amidohydrolase. (556 aa)
flbTPutative flagellum biosynthesis repressor protein FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation. (145 aa)
CDX44134.15'-Nucleotidase domain protein; Belongs to the 5'-nucleotidase family. (707 aa)
CDX44391.1Adenine deaminase. (324 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (130 aa)
yjgFKetoacid-binding protein; Function of homologous gene experimentally demonstrated in an other organism; putative enzyme. (121 aa)
soxA-3Dibenzothiophene desulfurization enzyme A. (435 aa)
soxA-4Dibenzothiophene desulfurization enzyme A. (438 aa)
rutEOxidoreductase subunit of the alternative pyrimidine degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (225 aa)
CDX45467.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (215 aa)
xseAExodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (521 aa)
rnhBRibonuclease HII, degrades RNA of DNA-RNA hybrids; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (218 aa)
xseBExodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (83 aa)
rnhARibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (176 aa)
CDX46577.1Isochorismatase hydrolase. (224 aa)
CDX46581.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (312 aa)
CDX19684.1Isochorismatase hydrolase. (183 aa)
xdhBXanthine dehydrogenase, FAD-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (286 aa)
msiEndonuclease S1 homolog. (316 aa)
lcdHL-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (383 aa)
CDX13028.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (307 aa)
allAUreidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source. (163 aa)
rutFflavin:NADH oxidoreductase subunit of alternative pyrimidine degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (173 aa)
CDX12194.1Xanthine dehydrogenase accessory protein XdhC. (300 aa)
yxeKPutative monooxygenase YxeK; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (416 aa)
CDX12132.1Nitrilotriacetate monooxygenase component A. (323 aa)
CDX14611.1Hypothetical protein; No homology to any previously reported sequences. (81 aa)
CDX14596.1Hypothetical protein; No homology to any previously reported sequences. (123 aa)
guaDGuanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (437 aa)
rneRibonuclease, Rne/Rng family protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (995 aa)
rhlE-2RNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the DEAD box helicase family. (517 aa)
rhlERNA helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (485 aa)
mazGNucleoside triphosphate pyrophosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (274 aa)
CDX30712.1Alpha/beta hydrolase fold protein. (275 aa)
CDX30001.1Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. (493 aa)
CDX29971.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (161 aa)
CDX29563.1Endoribonuclease L-PSP. (127 aa)
CDX29551.1Cytosine deaminase-like protein. (433 aa)
CDX29288.1Antibiotic biosynthesis monooxygenase. (104 aa)
CDX29202.1Carbon monoxide dehydrogenase chain C. (265 aa)
CDX29022.1Isochorismatase hydrolase. (221 aa)
CDX28780.1Deoxyguanosinetriphosphate triphosphohydrolase-like protein 1; Belongs to the dGTPase family. Type 2 subfamily. (409 aa)
surEBroad specificity 5'(3')-nucleotidase and polyphosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (252 aa)
CDX28578.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (209 aa)
adeAdenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (605 aa)
rutF-2flavin:NADH oxidoreductase subunit of alternative pyrimidine degradation pathway; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (164 aa)
CDX24824.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (112 aa)
CDX24813.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (234 aa)
laaAL-amino acid amidase; Belongs to the peptidase S33 family. (301 aa)
alcPutative allantoicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the allantoicase family. (410 aa)
CDX22091.1Alpha/beta hydrolase fold protein. (275 aa)
CDX20840.1Putative tryptophan 2,3-dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (251 aa)
CDX19717.1Cytosine deaminase. (398 aa)
CDX31860.1Isochorismatase hydrolase. (225 aa)
CDX32175.1Molybdopterin dehydrogenase FAD-binding protein. (287 aa)
CDX32264.1Isochorismatase hydrolase. (202 aa)
CDX32495.13-hydroxyacyl-CoA dehydrogenase. (307 aa)
CDX32516.1Alpha/beta hydrolase fold protein. (268 aa)
CDX32825.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (549 aa)
CDX32829.1Endoribonuclease L-PSP. (138 aa)
CDX33170.1Molybdopterin dehydrogenase FAD-binding protein. (264 aa)
Your Current Organism:
Mesorhizobium plurifarium
NCBI taxonomy Id: 69974
Other names: CIP 105884, JCM 21566, LMG 11892, LMG:11892, M. plurifarium, Mesorhizobium sp. LMG 11892, NBRC 102498, Rhizobium sp. LMG 7836, Rhizobium sp. LMG 7854
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