8 items (Enterobacter lignolyticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADO49395.1	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3. (303 aa)
	ADO49396.1	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. (246 aa)
	ADO49397.1	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. (224 aa)
	ADO49398.1	ABC transporter related protein; KEGG: enc:ECL_03051 glutamate/aspartate transport ATP-binding protein GltL; PFAM: ABC transporter related; SMART: AAA ATPase. (241 aa)
	ADO49695.1	KEGG: cko:CKO_01690 hypothetical protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor. (276 aa)
	ADO49696.1	KEGG: ent:Ent638_1778 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (272 aa)
	ADO49697.1	KEGG: kva:Kvar_4086 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. (260 aa)
	ADO49698.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4087 binding-protein-dependent transport systems inner membrane component. (226 aa)

Your Current Organism:

Enterobacter lignolyticus

NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADO49395.1	ADO49396.1	Entcl_3149	Entcl_3150	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.992
ADO49395.1	ADO49397.1	Entcl_3149	Entcl_3151	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.984
ADO49395.1	ADO49398.1	Entcl_3149	Entcl_3152	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	ABC transporter related protein; KEGG: enc:ECL_03051 glutamate/aspartate transport ATP-binding protein GltL; PFAM: ABC transporter related; SMART: AAA ATPase.	0.982
ADO49395.1	ADO49696.1	Entcl_3149	Entcl_3451	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: ent:Ent638_1778 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.482
ADO49395.1	ADO49697.1	Entcl_3149	Entcl_3452	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	KEGG: kva:Kvar_4086 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.745
ADO49395.1	ADO49698.1	Entcl_3149	Entcl_3453	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4087 binding-protein-dependent transport systems inner membrane component.	0.743
ADO49396.1	ADO49395.1	Entcl_3150	Entcl_3149	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.992
ADO49396.1	ADO49397.1	Entcl_3150	Entcl_3151	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.988
ADO49396.1	ADO49398.1	Entcl_3150	Entcl_3152	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; KEGG: enc:ECL_03051 glutamate/aspartate transport ATP-binding protein GltL; PFAM: ABC transporter related; SMART: AAA ATPase.	0.996
ADO49396.1	ADO49695.1	Entcl_3150	Entcl_3450	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cko:CKO_01690 hypothetical protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.	0.804
ADO49396.1	ADO49696.1	Entcl_3150	Entcl_3451	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: ent:Ent638_1778 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.842
ADO49396.1	ADO49697.1	Entcl_3150	Entcl_3452	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: kva:Kvar_4086 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.499
ADO49396.1	ADO49698.1	Entcl_3150	Entcl_3453	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4087 binding-protein-dependent transport systems inner membrane component.	0.741
ADO49397.1	ADO49395.1	Entcl_3151	Entcl_3149	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 3; KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.	0.984
ADO49397.1	ADO49396.1	Entcl_3151	Entcl_3150	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.988
ADO49397.1	ADO49398.1	Entcl_3151	Entcl_3152	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	ABC transporter related protein; KEGG: enc:ECL_03051 glutamate/aspartate transport ATP-binding protein GltL; PFAM: ABC transporter related; SMART: AAA ATPase.	0.996
ADO49397.1	ADO49695.1	Entcl_3151	Entcl_3450	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: cko:CKO_01690 hypothetical protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.	0.819
ADO49397.1	ADO49696.1	Entcl_3151	Entcl_3451	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: ent:Ent638_1778 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.	0.875
ADO49397.1	ADO49697.1	Entcl_3151	Entcl_3452	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	KEGG: kva:Kvar_4086 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	0.623
ADO49397.1	ADO49698.1	Entcl_3151	Entcl_3453	KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4087 binding-protein-dependent transport systems inner membrane component.	0.523