STRINGSTRING
PECL_1186 PECL_1186 dnaG dnaG sigA sigA trmK trmK PECL_889 PECL_889 glyS glyS glyQ glyQ recO recO dgkA dgkA ybeY ybeY PECL_952 PECL_952 PECL_953 PECL_953
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PECL_1186PAP2 superfamily protein. (206 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (618 aa)
sigARNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (380 aa)
trmKtRNA (adenine-N(1)-)-methyltransferase TrmK. (230 aa)
PECL_889NIF3 family protein. (261 aa)
glySglycine--tRNA ligase, beta subunit. (690 aa)
glyQglycine--tRNA ligase, alpha subunit. (298 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (251 aa)
dgkAUndecaprenol kinase. (127 aa)
ybeYHypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (156 aa)
PECL_952istB-like ATP binding family protein. (323 aa)
PECL_953Yqey-like protein. (147 aa)
Your Current Organism:
Pediococcus claussenii
NCBI taxonomy Id: 701521
Other names: P. claussenii ATCC BAA-344, Pediococcus claussenii ATCC BAA-344, Pediococcus claussenii ATCC str. BAA-344, Pediococcus claussenii ATCC strain BAA-344
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.