(91 nodes) Mitochondrial ribosome network (Acyrthosiphon pisum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X1XLY4_ACYPI	Uncharacterized protein. (76 aa)
	J9JKX0_ACYPI	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (478 aa)
	J9JJJ1_ACYPI	Uncharacterized protein. (152 aa)
	J9JJA7_ACYPI	CHCH domain-containing protein. (121 aa)
	ACYPI009104	ACYPI009104 protein. (303 aa)
	ACYPI009921	ACYPI009921 protein. (142 aa)
	ACYPI002040	ACYPI002040 protein; Belongs to the universal ribosomal protein uL22 family. (219 aa)
	ACYPI002845	ACYPI002845 protein. (182 aa)
	ACYPI007219	ACYPI007219 protein; Belongs to the universal ribosomal protein uS12 family. (137 aa)
	ACYPI007920	ACYPI007920 protein. (169 aa)
	ACYPI006860	ACYPI006860 protein. (182 aa)
	ACYPI008968	ACYPI008968 protein. (166 aa)
	ACYPI008030	ACYPI008030 protein. (176 aa)
	ACYPI007817	ACYPI007817 protein. (183 aa)
	ACYPI001497	ACYPI001497 protein. (340 aa)
	ACYPI004065	ACYPI004065 protein. (300 aa)
	ACYPI000999	ACYPI000999 protein. (231 aa)
	ACYPI002879	ACYPI002879 protein. (134 aa)
	ACYPI007336	ACYPI007336 protein; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	ACYPI001324	ACYPI001324 protein. (128 aa)
	ACYPI007195	ACYPI007195 protein. (180 aa)
	ACYPI009551	ACYPI009551 protein. (162 aa)
	ACYPI008449	ACYPI008449 protein. (119 aa)
	ACYPI007741	ACYPI007741 protein. (246 aa)
	ACYPI008057	ACYPI008057 protein. (330 aa)
	ACYPI008144	ACYPI008144 protein. (161 aa)
	ACYPI006840	ACYPI006840 protein. (177 aa)
	ACYPI006151	ACYPI006151 protein. (395 aa)
	ACYPI001169	ACYPI001169 protein. (101 aa)
	ACYPI008730	ACYPI008730 protein. (254 aa)
	ACYPI31744	ACYPI31744 protein. (154 aa)
	ACYPI002597	ACYPI002597 protein. (195 aa)
	ACYPI003461	ACYPI003461 protein. (142 aa)
	J9JTE6_ACYPI	Uncharacterized protein. (73 aa)
	J9JTV8_ACYPI	Elongation factor Ts, mitochondrial. (194 aa)
	J9JU73_ACYPI	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (196 aa)
	J9JU83_ACYPI	Uncharacterized protein. (375 aa)
	J9JVU5_ACYPI	Uncharacterized protein. (201 aa)
	J9JWM0_ACYPI	L51_S25_CI-B8 domain-containing protein. (190 aa)
	J9JWS2_ACYPI	RF_PROK_I domain-containing protein. (191 aa)
	J9JX68_ACYPI	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (245 aa)
	J9JZM1_ACYPI	Uncharacterized protein. (159 aa)
	J9K0S9_ACYPI	Uncharacterized protein. (162 aa)
	J9K252_ACYPI	MRP-S28 domain-containing protein. (334 aa)
	J9K2S1_ACYPI	Uncharacterized protein. (216 aa)
	J9K2U1_ACYPI	Uncharacterized protein. (564 aa)
	J9K329_ACYPI	Uncharacterized protein. (266 aa)
	J9K3K6_ACYPI	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (267 aa)
	J9K4N0_ACYPI	Uncharacterized protein. (87 aa)
	J9K5M6_ACYPI	L51_S25_CI-B8 domain-containing protein. (167 aa)
	J9K6J5_ACYPI	Uncharacterized protein. (175 aa)
	J9K741_ACYPI	Uncharacterized protein. (400 aa)
	J9K7H9_ACYPI	Uncharacterized protein. (188 aa)
	J9K7K3_ACYPI	Mitogen-activated protein kinase kinase kinase kinase. (282 aa)
	J9K7M9_ACYPI	Uncharacterized protein. (200 aa)
	J9K879_ACYPI	Uncharacterized protein. (117 aa)
	J9K9E4_ACYPI	Uncharacterized protein. (138 aa)
	J9K9P7_ACYPI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (454 aa)
	J9KA34_ACYPI	Ribosomal_L30 domain-containing protein. (183 aa)
	J9KAI1_ACYPI	Uncharacterized protein. (222 aa)
	J9KB06_ACYPI	Uncharacterized protein. (264 aa)
	J9KPR3_ACYPI	CCHC-type domain-containing protein. (738 aa)
	J9KVT9_ACYPI	Uncharacterized protein. (233 aa)
	J9KZK8_ACYPI	Uncharacterized protein. (255 aa)
	J9L0J3_ACYPI	Uncharacterized protein. (254 aa)
	J9L3V1_ACYPI	Uncharacterized protein. (106 aa)
	J9LA44_ACYPI	Uncharacterized protein. (292 aa)
	J9M969_ACYPI	Uncharacterized protein. (161 aa)
	X1WP25_ACYPI	Uncharacterized protein; Belongs to the universal ribosomal protein uL23 family. (340 aa)
	X1WP88_ACYPI	SpoU_sub_bind domain-containing protein; Belongs to the universal ribosomal protein uL11 family. (344 aa)
	X1WUW3_ACYPI	Uncharacterized protein. (143 aa)
	X1WWA4_ACYPI	Uncharacterized protein. (183 aa)
	X1WZE6_ACYPI	Uncharacterized protein. (329 aa)
	X1WZJ3_ACYPI	Uncharacterized protein. (266 aa)
	X1X7U6_ACYPI	Uncharacterized protein. (110 aa)
	X1XCM8_ACYPI	Uncharacterized protein. (284 aa)
	X1XJW3_ACYPI	Uncharacterized protein. (145 aa)
	Mrpl36	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (99 aa)
	J9JSX7_ACYPI	Nudix hydrolase domain-containing protein. (266 aa)
	ACYPI004127	ACYPI004127 protein. (184 aa)
	ACYPI005265	ACYPI005265 protein. (137 aa)
	ACYPI005567	ACYPI005567 protein. (197 aa)
	J9JST4_ACYPI	Uncharacterized protein. (463 aa)
	J9JR52_ACYPI	Uncharacterized protein. (376 aa)
	J9JR02_ACYPI	Uncharacterized protein. (341 aa)
	J9JNG9_ACYPI	Uncharacterized protein. (115 aa)
	J9JND0_ACYPI	Uncharacterized protein. (370 aa)
	J9JMT4_ACYPI	Uncharacterized protein. (339 aa)
	J9JM99_ACYPI	Uncharacterized protein. (291 aa)
	J9JM41_ACYPI	RNase III domain-containing protein. (348 aa)
	J9JL32_ACYPI	RIBOSOMAL_L9 domain-containing protein. (257 aa)

Your Current Organism:

Acyrthosiphon pisum

NCBI taxonomy Id: 7029
Other names: A. pisum, Acyrthosiphum pisum, pea aphid

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACYPI000999	ACYPI001169	C4WVL9	C4WSU2	ACYPI000999 protein.	ACYPI001169 protein.	0.912
ACYPI000999	ACYPI001324	C4WVL9	C4WUW3	ACYPI000999 protein.	ACYPI001324 protein.	0.764
ACYPI000999	ACYPI001497	C4WVL9	C4WVX4	ACYPI000999 protein.	ACYPI001497 protein.	0.978
ACYPI000999	ACYPI002040	C4WVL9	C4WXB4	ACYPI000999 protein.	ACYPI002040 protein; Belongs to the universal ribosomal protein uL22 family.	0.989
ACYPI000999	ACYPI002597	C4WVL9	C4WSI9	ACYPI000999 protein.	ACYPI002597 protein.	0.995
ACYPI000999	ACYPI002845	C4WVL9	C4WX39	ACYPI000999 protein.	ACYPI002845 protein.	0.968
ACYPI000999	ACYPI002879	C4WVL9	C4WV81	ACYPI000999 protein.	ACYPI002879 protein.	0.999
ACYPI000999	ACYPI003461	C4WVL9	C4WSA4	ACYPI000999 protein.	ACYPI003461 protein.	0.818
ACYPI000999	ACYPI004065	C4WVL9	C4WVM0	ACYPI000999 protein.	ACYPI004065 protein.	0.995
ACYPI000999	ACYPI004127	C4WVL9	C4WS93	ACYPI000999 protein.	ACYPI004127 protein.	0.998
ACYPI000999	ACYPI005265	C4WVL9	C4WRT3	ACYPI000999 protein.	ACYPI005265 protein.	0.624
ACYPI000999	ACYPI005567	C4WVL9	C4WRQ6	ACYPI000999 protein.	ACYPI005567 protein.	0.934
ACYPI000999	ACYPI006151	C4WVL9	C4WT82	ACYPI000999 protein.	ACYPI006151 protein.	0.999
ACYPI000999	ACYPI006840	C4WVL9	C4WTC6	ACYPI000999 protein.	ACYPI006840 protein.	0.959
ACYPI000999	ACYPI006860	C4WVL9	C4WWP0	ACYPI000999 protein.	ACYPI006860 protein.	0.887
ACYPI000999	ACYPI007195	C4WVL9	C4WUE9	ACYPI000999 protein.	ACYPI007195 protein.	0.990
ACYPI000999	ACYPI007219	C4WVL9	C4WX29	ACYPI000999 protein.	ACYPI007219 protein; Belongs to the universal ribosomal protein uS12 family.	0.999
ACYPI000999	ACYPI007336	C4WVL9	C4WV71	ACYPI000999 protein.	ACYPI007336 protein; Belongs to the bacterial ribosomal protein bL20 family.	0.995
ACYPI000999	ACYPI007741	C4WVL9	C4WTX8	ACYPI000999 protein.	ACYPI007741 protein.	0.968
ACYPI000999	ACYPI007817	C4WVL9	C4WW21	ACYPI000999 protein.	ACYPI007817 protein.	0.998