(30 nodes) Mitochondrial small ribosomal subunit network (Acyrthosiphon pisum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACYPI007219	ACYPI007219 protein; Belongs to the universal ribosomal protein uS12 family. (137 aa)
	ACYPI006151	ACYPI006151 protein. (395 aa)
	ACYPI002845	ACYPI002845 protein. (182 aa)
	J9JJJ1_ACYPI	Uncharacterized protein. (152 aa)
	J9JMT4_ACYPI	Uncharacterized protein. (339 aa)
	J9JND0_ACYPI	Uncharacterized protein. (370 aa)
	J9JNG9_ACYPI	Uncharacterized protein. (115 aa)
	J9JR52_ACYPI	Uncharacterized protein. (376 aa)
	J9JTV8_ACYPI	Elongation factor Ts, mitochondrial. (194 aa)
	J9JVU5_ACYPI	Uncharacterized protein. (201 aa)
	J9JZM1_ACYPI	Uncharacterized protein. (159 aa)
	J9K252_ACYPI	MRP-S28 domain-containing protein. (334 aa)
	J9K2U1_ACYPI	Uncharacterized protein. (564 aa)
	J9K3K6_ACYPI	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (267 aa)
	J9K4N0_ACYPI	Uncharacterized protein. (87 aa)
	J9K5M6_ACYPI	L51_S25_CI-B8 domain-containing protein. (167 aa)
	J9K879_ACYPI	Uncharacterized protein. (117 aa)
	J9K9E4_ACYPI	Uncharacterized protein. (138 aa)
	J9K9P7_ACYPI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (454 aa)
	J9KAI1_ACYPI	Uncharacterized protein. (222 aa)
	J9KB06_ACYPI	Uncharacterized protein. (264 aa)
	J9KVT9_ACYPI	Uncharacterized protein. (233 aa)
	J9M969_ACYPI	Uncharacterized protein. (161 aa)
	ACYPI007920	ACYPI007920 protein. (169 aa)
	ACYPI008968	ACYPI008968 protein. (166 aa)
	ACYPI008030	ACYPI008030 protein. (176 aa)
	ACYPI007817	ACYPI007817 protein. (183 aa)
	ACYPI000999	ACYPI000999 protein. (231 aa)
	ACYPI002879	ACYPI002879 protein. (134 aa)
	ACYPI008144	ACYPI008144 protein. (161 aa)

Your Current Organism:

Acyrthosiphon pisum

NCBI taxonomy Id: 7029
Other names: A. pisum, Acyrthosiphum pisum, pea aphid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACYPI000999	ACYPI002845	C4WVL9	C4WX39	ACYPI000999 protein.	ACYPI002845 protein.	0.968
ACYPI000999	ACYPI002879	C4WVL9	C4WV81	ACYPI000999 protein.	ACYPI002879 protein.	0.999
ACYPI000999	ACYPI006151	C4WVL9	C4WT82	ACYPI000999 protein.	ACYPI006151 protein.	0.999
ACYPI000999	ACYPI007219	C4WVL9	C4WX29	ACYPI000999 protein.	ACYPI007219 protein; Belongs to the universal ribosomal protein uS12 family.	0.999
ACYPI000999	ACYPI007817	C4WVL9	C4WW21	ACYPI000999 protein.	ACYPI007817 protein.	0.998
ACYPI000999	ACYPI007920	C4WVL9	C4WX26	ACYPI000999 protein.	ACYPI007920 protein.	0.988
ACYPI000999	ACYPI008030	C4WVL9	C4WW60	ACYPI000999 protein.	ACYPI008030 protein.	0.941
ACYPI000999	ACYPI008144	C4WVL9	C4WTS4	ACYPI000999 protein.	ACYPI008144 protein.	0.992
ACYPI000999	ACYPI008968	C4WVL9	C4WWC7	ACYPI000999 protein.	ACYPI008968 protein.	0.992
ACYPI000999	J9JJJ1_ACYPI	C4WVL9	J9JJJ1	ACYPI000999 protein.	Uncharacterized protein.	0.999
ACYPI000999	J9JMT4_ACYPI	C4WVL9	J9JMT4	ACYPI000999 protein.	Uncharacterized protein.	0.989
ACYPI000999	J9JND0_ACYPI	C4WVL9	J9JND0	ACYPI000999 protein.	Uncharacterized protein.	0.955
ACYPI000999	J9JNG9_ACYPI	C4WVL9	J9JNG9	ACYPI000999 protein.	Uncharacterized protein.	0.988
ACYPI000999	J9JR52_ACYPI	C4WVL9	J9JR52	ACYPI000999 protein.	Uncharacterized protein.	0.998
ACYPI000999	J9JTV8_ACYPI	C4WVL9	J9JTV8	ACYPI000999 protein.	Elongation factor Ts, mitochondrial.	0.983
ACYPI000999	J9JVU5_ACYPI	C4WVL9	J9JVU5	ACYPI000999 protein.	Uncharacterized protein.	0.998
ACYPI000999	J9JZM1_ACYPI	C4WVL9	J9JZM1	ACYPI000999 protein.	Uncharacterized protein.	0.991
ACYPI000999	J9K252_ACYPI	C4WVL9	J9K252	ACYPI000999 protein.	MRP-S28 domain-containing protein.	0.992
ACYPI000999	J9K2U1_ACYPI	C4WVL9	J9K2U1	ACYPI000999 protein.	Uncharacterized protein.	0.976
ACYPI000999	J9K3K6_ACYPI	C4WVL9	J9K3K6	ACYPI000999 protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.999