STRINGSTRING
A0A090M1E8 A0A090M1E8 A0A090M223 A0A090M223 A0A090M286 A0A090M286 A0A090M2F7 A0A090M2F7 A0A090M458 A0A090M458 A0A090M4F6 A0A090M4F6 A0A090M4K4 A0A090M4K4 A0A090M4S1 A0A090M4S1 A0A090M595 A0A090M595 A0A090M5R7 A0A090M5R7 A0A090M5W5 A0A090M5W5 A0A090M5X8 A0A090M5X8 LSM4 LSM4 A0A090M6M5 A0A090M6M5 LSM1 LSM1 A0A090M7X1 A0A090M7X1 A0A090M8B9 A0A090M8B9 A0A090MAN9 A0A090MAN9 LSM8 LSM8 A0A090N3H2 A0A090N3H2 A0A090N3P4 A0A090N3P4 A0A090N4A3 A0A090N4A3 A0A090N4I1 A0A090N4I1 A0A090N4W5 A0A090N4W5 A0A096P7C9 A0A096P7C9 A0A096P7F0 A0A096P7F0 A0A096P7J4 A0A096P7J4 A0A096P7R1 A0A096P7R1 A0A096P7W0 A0A096P7W0 A0A096P814 A0A096P814 A0A096P858 A0A096P858 A0A096P9N2 A0A096P9N2 LSM3 LSM3 A0A096PAZ0 A0A096PAZ0 A0A096PB46 A0A096PB46 A0A096PBP8 A0A096PBP8 Q00TY4_OSTTA Q00TY4_OSTTA Q00UG3_OSTTA Q00UG3_OSTTA Q00WH2_OSTTA Q00WH2_OSTTA LSM5 LSM5 Q015X0_OSTTA Q015X0_OSTTA Q01EB2_OSTTA Q01EB2_OSTTA Q01EK0_OSTTA Q01EK0_OSTTA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A090M1E8Nucleotide-binding, alpha-beta plait. (448 aa)
A0A090M223Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A090M286Pre-mRNA splicing factor PRP21-like protein. (519 aa)
A0A090M2F7Splicing factor subunit; Belongs to the SF3B5 family. (88 aa)
A0A090M458PHF5-like. (112 aa)
A0A090M4F6Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (112 aa)
A0A090M4K4Nucleotide-binding, alpha-beta plait. (774 aa)
A0A090M4S1Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (79 aa)
A0A090M595Helicase, C-terminal; Belongs to the DEAD box helicase family. (729 aa)
A0A090M5R7Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (145 aa)
A0A090M5W5Prp31 C-terminal. (505 aa)
A0A090M5X8Helicase, C-terminal. (2156 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
A0A090M6M5Cleavage/polyadenylation specificity factor, A subunit, C-terminal. (1195 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (126 aa)
A0A090M7X1Protein-tyrosine phosphatase, active site. (564 aa)
A0A090M8B9Helicase, C-terminal. (678 aa)
A0A090MAN9G-protein beta WD-40 repeat. (371 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
A0A090N3H2Nucleotide-binding, alpha-beta plait. (322 aa)
A0A090N3P4U4/U6 small nuclear ribonucleoprotein Prp3. (724 aa)
A0A090N4A3RNA recognition motif, spliceosomal PrP8. (2327 aa)
A0A090N4I1FACT complex subunit Spt16p/Cdc68p. (142 aa)
A0A090N4W5Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (101 aa)
A0A096P7C9Small nuclear ribonucleoprotein G. (83 aa)
A0A096P7F0Armadillo-type fold. (1258 aa)
A0A096P7J4Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (107 aa)
A0A096P7R1Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (122 aa)
A0A096P7W0Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (82 aa)
A0A096P814SART-1 protein. (834 aa)
A0A096P858Helicase, C-terminal. (542 aa)
A0A096P9N2Small nuclear ribonucleoprotein Sm D2. (102 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
A0A096PAZ0Tetratricopeptide repeat. (897 aa)
A0A096PB46Zinc finger, C2H2-type matrin. (275 aa)
A0A096PBP8Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (89 aa)
Q00TY4_OSTTAZinc finger, C2H2-type matrin. (515 aa)
Q00UG3_OSTTANucleotide-binding, alpha-beta plait. (122 aa)
Q00WH2_OSTTASplicing factor motif. (455 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (95 aa)
Q015X0_OSTTATranslation elongation/initiation factor/Ribosomal, beta-barrel. (1016 aa)
Q01EB2_OSTTAU1 small nuclear ribonucleoprotein C. (66 aa)
Q01EK0_OSTTANucleotide-binding, alpha-beta plait. (221 aa)
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
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