STRINGSTRING
A0A090M5R7 A0A090M5R7 A0A090M4S1 A0A090M4S1 A0A090M4F6 A0A090M4F6 A0A090M223 A0A090M223 A0A090LZH7 A0A090LZH7 LSM8 LSM8 LSM4 LSM4 A0A090N4W5 A0A090N4W5 A0A096P7C9 A0A096P7C9 A0A096P7J4 A0A096P7J4 A0A096P7R1 A0A096P7R1 Q00ZJ3_OSTTA Q00ZJ3_OSTTA A0A096PBP8 A0A096PBP8 LSM3 LSM3 A0A096P9N2 A0A096P9N2 A0A096P958 A0A096P958 A0A096P7W0 A0A096P7W0 LSM5 LSM5 LSM1 LSM1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A090M5R7Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (145 aa)
A0A090M4S1Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (79 aa)
A0A090M4F6Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (112 aa)
A0A090M223Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A090LZH7Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (239 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
A0A090N4W5Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (101 aa)
A0A096P7C9Small nuclear ribonucleoprotein G. (83 aa)
A0A096P7J4Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (107 aa)
A0A096P7R1Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (122 aa)
Q00ZJ3_OSTTARibonucleoprotein LSM domain. (98 aa)
A0A096PBP8Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (89 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
A0A096P9N2Small nuclear ribonucleoprotein Sm D2. (102 aa)
A0A096P958Like-Sm (LSM) domain. (417 aa)
A0A096P7W0Ribonucleoprotein LSM domain,eukaryotic/archaea-type. (82 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (95 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (126 aa)
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.