STRINGSTRING
hofC hofC hofB hofB ppdD ppdD ybaV ybaV ybaW ybaW ycaI ycaI recD recD recB recB ptrA ptrA recC recC PANA_3110 PANA_3110 ygdB ygdB ppdB ppdB ppdA ppdA lgt lgt nudH nudH yggR yggR smf smf tapD tapD hofQ hofQ PANA_3670 PANA_3670 PANA_3671 PANA_3671 PANA_3672 PANA_3672 yrfD yrfD gntX gntX yifB yifB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hofCHofC; Protein transport protein HofC; Similar to Pantoea sp. At-9b, type II secretion system protein (NCBI: ZP_05729799.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (404 aa)
hofBHofB; Protein transport protein HofB; Similar to Pantoea sp. At-9b, type II secretion system protein E (NCBI: ZP_05729800.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (468 aa)
ppdDPpdD; Prepilin peptidase dependent protein D precursor; Similar to Pantoea sp. At-9b, prelipin peptidase dependent protein (NCBI: ZP_05729801.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Extracellular; Belongs to the N-Me-Phe pilin family. (151 aa)
ybaVYbaV; DNA Uptake Protein; Similar to Pantoea sp. At-9b, competence protein ComEA helix-hairpin-helix repeat protein (NCBI: ZP_05727488.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown. (107 aa)
ybaWYbaW; Thioesterase; Similar to Pantoea sp. At-9b, thioesterase superfamily protein (NCBI: ZP_05727489.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (159 aa)
ycaIYcaI; DNA Internalization-Related Competence; Similar to Pantoea sp. At-9b, DNA internalization-related competence protein ComEC/Rec2 (NCBI: ZP_05728888.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (764 aa)
recDRecD; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any li [...] (615 aa)
recBRecB; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any li [...] (1179 aa)
ptrAPtrA; Protease III precursor; Similar to Pantoea sp. At-9b, peptidase M16 domain protein (NCBI: ZP_05732183.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic. (963 aa)
recCRecC; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any li [...] (1125 aa)
PANA_3110Hypothetical Protein; Similar to Pantoea sp. At-9b, hypothetical protein Pat9bDRAFT_5502 (NCBI: ZP_05732185.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Unknown. (79 aa)
ygdBYgdB; Hypothetical Protein YgdB; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein EpC_28690 (NCBI: YP_002649850.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (134 aa)
ppdBPpdB; Prepilin peptidase dependent protein B precursor; Similar to Pantoea sp. At-9b, prepilin peptidase dependent protein B (NCBI: ZP_05732186.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Unknown. (184 aa)
ppdAPpdA; Prepilin peptidase dependent protein A precursor; Similar to Pantoea sp. At-9b, putative prepilin peptidase dependent protein (NCBI: ZP_05732187.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Unknown. (156 aa)
lgtLgt; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (294 aa)
nudHNudH; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (175 aa)
yggRYggR; Twitching Motility Protein; Similar to Pantoea sp. At-9b, twitching motility protein (NCBI: ZP_05730221.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (331 aa)
smfSmf; Protein Smf; Similar to Pantoea sp. At-9b, DNA protecting protein DprA (NCBI: ZP_05732237.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown. (376 aa)
tapDTapD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (257 aa)
hofQHofQ; Protein transport protein HofQ precursor; Similar to Pantoea sp. At-9b, type IV pilus secretin PilQ (NCBI: ZP_05731094.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (413 aa)
PANA_3670Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731095.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (130 aa)
PANA_3671Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731096.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (162 aa)
PANA_3672Hypothetical Protein; Similar to Pantoea sp. At-9b, Fimbrial assembly family protein (NCBI: ZP_05731097.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (180 aa)
yrfDYrfD; Periplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731098.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (279 aa)
gntXGntX; Protein GntX; Similar to Pantoea sp. At-9b, phosphoribosyltransferase (NCBI: ZP_05731114.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (233 aa)
yifBYifB; Mg Chelatase-Related Protein; Similar to Pantoea sp. At-9b, Mg chelatase, subunit ChlI (NCBI: ZP_05732519.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Unknown. (510 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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