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hofC hofC hofB hofB ppdD ppdD ybaV ybaV ybaW ybaW ycaI ycaI yggR yggR smf smf tapD tapD hofQ hofQ PANA_3670 PANA_3670 PANA_3671 PANA_3671 PANA_3672 PANA_3672 yrfD yrfD gntX gntX yifB yifB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hofCHofC; Protein transport protein HofC; Similar to Pantoea sp. At-9b, type II secretion system protein (NCBI: ZP_05729799.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (404 aa)
hofBHofB; Protein transport protein HofB; Similar to Pantoea sp. At-9b, type II secretion system protein E (NCBI: ZP_05729800.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (468 aa)
ppdDPpdD; Prepilin peptidase dependent protein D precursor; Similar to Pantoea sp. At-9b, prelipin peptidase dependent protein (NCBI: ZP_05729801.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Extracellular; Belongs to the N-Me-Phe pilin family. (151 aa)
ybaVYbaV; DNA Uptake Protein; Similar to Pantoea sp. At-9b, competence protein ComEA helix-hairpin-helix repeat protein (NCBI: ZP_05727488.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown. (107 aa)
ybaWYbaW; Thioesterase; Similar to Pantoea sp. At-9b, thioesterase superfamily protein (NCBI: ZP_05727489.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (159 aa)
ycaIYcaI; DNA Internalization-Related Competence; Similar to Pantoea sp. At-9b, DNA internalization-related competence protein ComEC/Rec2 (NCBI: ZP_05728888.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (764 aa)
yggRYggR; Twitching Motility Protein; Similar to Pantoea sp. At-9b, twitching motility protein (NCBI: ZP_05730221.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (331 aa)
smfSmf; Protein Smf; Similar to Pantoea sp. At-9b, DNA protecting protein DprA (NCBI: ZP_05732237.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown. (376 aa)
tapDTapD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (257 aa)
hofQHofQ; Protein transport protein HofQ precursor; Similar to Pantoea sp. At-9b, type IV pilus secretin PilQ (NCBI: ZP_05731094.1); COG: Intracellular trafficking, secretion, and vesicular transport; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (413 aa)
PANA_3670Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731095.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (130 aa)
PANA_3671Hypothetical Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731096.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (162 aa)
PANA_3672Hypothetical Protein; Similar to Pantoea sp. At-9b, Fimbrial assembly family protein (NCBI: ZP_05731097.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (180 aa)
yrfDYrfD; Periplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731098.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (279 aa)
gntXGntX; Protein GntX; Similar to Pantoea sp. At-9b, phosphoribosyltransferase (NCBI: ZP_05731114.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (233 aa)
yifBYifB; Mg Chelatase-Related Protein; Similar to Pantoea sp. At-9b, Mg chelatase, subunit ChlI (NCBI: ZP_05732519.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Unknown. (510 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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