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avtA avtA yjiR yjiR tyrB tyrB gabT gabT ddc ddc thrC thrC mdeA mdeA hemL hemL ybdL ybdL tdcB tdcB bioA bioA bioF bioF serC serC aspC aspC ycbX ycbX pabC pabC argM argM sufS sufS gabT-2 gabT-2 malP malP dadB dadB patB patB gabT-3 gabT-3 hisC hisC yfbQ yfbQ mocR mocR puuE puuE mocR-2 mocR-2 yfdZ yfdZ iscS iscS glyA1 glyA1 csdA csdA dsdA dsdA lysA lysA yggS yggS metC metC tdcB-2 tdcB-2 argD argD malP-2 malP-2 glgP glgP yjiR-2 yjiR-2 ilvA ilvA metB metB kbl kbl dat dat ddc-2 ddc-2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
avtAAvtA; Valine--pyruvate aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05729654.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (416 aa)
yjiRYjiR; Transcriptional Regulator GntR Family; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732285.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (532 aa)
tyrBTyrB; Aromatic-amino-acid aminotransferase; Similar to Pantoea sp. At-9b, Aromatic-amino-acid transaminase (NCBI: ZP_05731733.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (411 aa)
gabTGabT; Probable aminotransferase; Similar to Erwinia pyrifoliae Ep1/96, Putative aminotransferase (NCBI: YP_002650625.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)
ddcDdc; L-2,4-diaminobutyrate decarboxylase; Similar to Erwinia tasmaniensis Et1/99, Putative decarboxylase (NCBI: YP_001908943.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (530 aa)
thrCThrC; Threonine synthase; Similar to Erwinia tasmaniensis Et1/99, threonine synthase (NCBI: YP_001906644.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (427 aa)
mdeAMdeA; Methionine gamma-lyase; Similar to Pantoea sp. At-9b, Cystathionine gamma-lyase (NCBI: ZP_05729838.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (427 aa)
hemLHemL; Glutamate-1-semialdehyde 2,1-aminomutase; Similar to Cronobacter turicensis, Glutamate-1-semialdehyde 2,1-aminomutase (NCBI: YP_003209148.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (426 aa)
ybdLYbdL; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05732227.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (386 aa)
tdcBTdcB; Threonine dehydratase catabolic; Similar to Rhizobium leguminosarum bv. trifolii WSM2304, Pyridoxal-5'-phosphate-dependent protein beta subunit (NCBI: YP_002278414.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (323 aa)
bioABioA; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (430 aa)
bioFBioF; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (383 aa)
serCSerC; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (367 aa)
aspCAspC; Aspartate aminotransferase; Similar to Pantoea sp. At-9b, Aspartate transaminase (NCBI: ZP_05728903.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (396 aa)
ycbXYcbX; Iron-Sulfur Protein; Similar to Pantoea sp. At-9b, MOSC domain protein beta barrel domain protein (NCBI: ZP_05728917.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown. (369 aa)
pabCPabC; Aminodeoxychorismate Lyase; Similar to Pantoea sp. At-9b, aminodeoxychorismate lyase (NCBI: ZP_05728388.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (308 aa)
argMArgM; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa)
sufSSufS; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. (408 aa)
gabT-2GabT; 4-aminobutyrate (GABA) Amino transferase; Similar to Sinorhizobium meliloti 1021, Aminotransferase (NCBI: NP_436219.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
malPMalP; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (807 aa)
dadBDadB; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (356 aa)
patBPatB; Putative aminotransferase B; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05728692.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (380 aa)
gabT-3GabT; 4-aminobutyrate aminotransferase; Similar to Pantoea sp. At-9b, 4-aminobutyrate aminotransferase (NCBI: ZP_05732608.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
hisCHisC; Histidinol-phosphate aminotransferase; Similar to Pantoea sp. At-9b, histidinol-phosphate aminotransferase (NCBI: ZP_05729025.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (356 aa)
yfbQYfbQ; Probable aminotransferase YfbQ; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05730575.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (421 aa)
mocRMocR; Probable rhizopine catabolism regulatory protein MocR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05730583.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (533 aa)
puuEPuuE; 4-aminobutyrate aminotransferase; Similar to Pantoea sp. At-9b, 4-aminobutyrate aminotransferase (NCBI: ZP_05730584.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (420 aa)
mocR-2MocR; Probable rhizopine catabolism regulatory protein MocR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05730615.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (430 aa)
yfdZYfdZ; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05727637.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (411 aa)
iscSIscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (386 aa)
glyA1GlyA1; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (419 aa)
csdACsdA; Cysteine sulfinate desulfinase; Similar to Pantoea sp. At-9b, aminotransferase class V (NCBI: ZP_05732175.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (402 aa)
dsdADsdA; D-serine dehydratase; Similar to Citrobacter koseri ATCC BAA-895, D-serine dehydratase (NCBI: YP_001451636.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (453 aa)
lysALysA; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (425 aa)
yggSYggS; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. (235 aa)
metCMetC; Cystathionine beta-lyase; Similar to Pantoea sp. At-9b, cystathionine beta-lyase (NCBI: ZP_05732092.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (396 aa)
tdcB-2TdcB; Threonine dehydratase catabolic; Similar to Citrobacter koseri ATCC BAA-895, threonine dehydratase (NCBI: YP_001456008.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (329 aa)
argDArgD; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa)
malP-2MalP; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (826 aa)
glgPGlgP; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (815 aa)
yjiR-2YjiR; Hypothetical protein YjiR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732579.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (496 aa)
ilvAIlvA; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (542 aa)
metBMetB; Cystathionine gamma-synthase; Similar to Pantoea sp. At-9b, O-succinylhomoserine (thiol)-lyase (NCBI: ZP_05730335.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (386 aa)
kblKbl; 2-amino-3-ketobutyrate coenzyme A ligase; Similar to Pantoea sp. At-9b, 2-amino-3-ketobutyrate coenzyme A ligase (NCBI: ZP_05730372.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (344 aa)
datDat; Diaminobutyrate--2-oxoglutarate aminotransferase; Similar to Pectobacterium wasabiae WPP163, 2,4-diaminobutyrate 4-transaminase (NCBI: YP_003259732.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (461 aa)
ddc-2Ddc; L-2,4-diaminobutyrate decarboxylase; Similar to Serratia proteamaculans 568, pyridoxal-dependent decarboxylase (NCBI: YP_001478647.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (494 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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