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yrfD yrfD wecA wecA slt slt mrcB mrcB PANA_0842 PANA_0842 ybdL ybdL nei nei msbB msbB yfbQ yfbQ PANA_3672 PANA_3672 mrcA mrcA ftsX ftsX mutM mutM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yrfDYrfD; Periplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05731098.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (279 aa)
wecAWecA; Catalyzes the transfer of the GlcNAc-1-phosphate moiety from UDP-GlcNAc onto the carrier lipid undecaprenyl phosphate (C55-P), yielding GlcNAc-pyrophosphoryl-undecaprenyl (GlcNAc-PP-C55). (367 aa)
sltSlt; Soluble lytic murein transglycosylase precursor; Similar to Pantoea sp. At-9b, Lytic transglycosylase catalytic (NCBI: ZP_05732506.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Periplasmic. (639 aa)
mrcBMrcB; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (842 aa)
PANA_0842Hypothetical Protein; Polysaccharide Deacetylase Family Protein; Similar to Pantoea sp. At-9b, urate catabolism protein (NCBI: ZP_05732212.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (329 aa)
ybdLYbdL; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05732227.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (386 aa)
neiNei; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (263 aa)
msbBMsbB; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. (296 aa)
yfbQYfbQ; Probable aminotransferase YfbQ; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05730575.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (421 aa)
PANA_3672Hypothetical Protein; Similar to Pantoea sp. At-9b, Fimbrial assembly family protein (NCBI: ZP_05731097.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (180 aa)
mrcAMrcA; Penicillin-binding protein 1A; Similar to Pantoea sp. At-9b, penicillin-binding protein, 1A family (NCBI: ZP_05731099.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (850 aa)
ftsXFtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (289 aa)
mutMMutM; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (275 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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