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tnaA tnaA rffA rffA yjiR yjiR tyrB tyrB gabT gabT ddc ddc mdeA mdeA hemL hemL ldcC ldcC pucG pucG ybdL ybdL bioA bioA bioF bioF ltaE ltaE serC serC aspC aspC argM argM sufS sufS gabT-2 gabT-2 patB patB spsC spsC gabT-3 gabT-3 hisC hisC yfbQ yfbQ puuE puuE yfdZ yfdZ iscS iscS glyA1 glyA1 csdA csdA gcvP gcvP speC speC metC metC argD argD yjiR-2 yjiR-2 metB metB kbl kbl tpl tpl arnB arnB dat dat
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tnaATnaA; Tryptophanase; Similar to Escherichia coli O157:H7 EDL933, tryptophanase (NCBI: NP_290344.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the beta-eliminating lyase family. (474 aa)
rffARffA; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)
yjiRYjiR; Transcriptional Regulator GntR Family; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732285.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (532 aa)
tyrBTyrB; Aromatic-amino-acid aminotransferase; Similar to Pantoea sp. At-9b, Aromatic-amino-acid transaminase (NCBI: ZP_05731733.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (411 aa)
gabTGabT; Probable aminotransferase; Similar to Erwinia pyrifoliae Ep1/96, Putative aminotransferase (NCBI: YP_002650625.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)
ddcDdc; L-2,4-diaminobutyrate decarboxylase; Similar to Erwinia tasmaniensis Et1/99, Putative decarboxylase (NCBI: YP_001908943.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (530 aa)
mdeAMdeA; Methionine gamma-lyase; Similar to Pantoea sp. At-9b, Cystathionine gamma-lyase (NCBI: ZP_05729838.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (427 aa)
hemLHemL; Glutamate-1-semialdehyde 2,1-aminomutase; Similar to Cronobacter turicensis, Glutamate-1-semialdehyde 2,1-aminomutase (NCBI: YP_003209148.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (426 aa)
ldcCLdcC; Lysine decarboxylase, constitutive; Similar to Pantoea sp. At-9b, Lysine decarboxylase (NCBI: ZP_05731579.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (729 aa)
pucGPucG; Purine catabolism protein PucG; Similar to Pantoea sp. At-9b, Serine--pyruvate transaminase (NCBI: ZP_05732222.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (418 aa)
ybdLYbdL; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05732227.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (386 aa)
bioABioA; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (430 aa)
bioFBioF; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (383 aa)
ltaELtaE; Low-specificity L-threonine aldolase; Similar to Pantoea sp. At-9b, Threonine aldolase (NCBI: ZP_05728861.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (371 aa)
serCSerC; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (367 aa)
aspCAspC; Aspartate aminotransferase; Similar to Pantoea sp. At-9b, Aspartate transaminase (NCBI: ZP_05728903.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (396 aa)
argMArgM; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa)
sufSSufS; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. (408 aa)
gabT-2GabT; 4-aminobutyrate (GABA) Amino transferase; Similar to Sinorhizobium meliloti 1021, Aminotransferase (NCBI: NP_436219.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
patBPatB; Putative aminotransferase B; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05728692.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (380 aa)
spsCSpsC; Spore coat polysaccharide biosynthesis protein spsC; Similar to Pantoea sp. At-9b, DegT/DnrJ/EryC1/StrS aminotransferase (NCBI: ZP_05728741.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (381 aa)
gabT-3GabT; 4-aminobutyrate aminotransferase; Similar to Pantoea sp. At-9b, 4-aminobutyrate aminotransferase (NCBI: ZP_05732608.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
hisCHisC; Histidinol-phosphate aminotransferase; Similar to Pantoea sp. At-9b, histidinol-phosphate aminotransferase (NCBI: ZP_05729025.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (356 aa)
yfbQYfbQ; Probable aminotransferase YfbQ; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05730575.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (421 aa)
puuEPuuE; 4-aminobutyrate aminotransferase; Similar to Pantoea sp. At-9b, 4-aminobutyrate aminotransferase (NCBI: ZP_05730584.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (420 aa)
yfdZYfdZ; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05727637.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (411 aa)
iscSIscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. (386 aa)
glyA1GlyA1; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (419 aa)
csdACsdA; Cysteine sulfinate desulfinase; Similar to Pantoea sp. At-9b, aminotransferase class V (NCBI: ZP_05732175.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (402 aa)
gcvPGcvP; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (971 aa)
speCSpeC; Ornithine decarboxylase, constitutive; Similar to Pantoea sp. At-9b, Ornithine decarboxylase (NCBI: ZP_05730237.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (716 aa)
metCMetC; Cystathionine beta-lyase; Similar to Pantoea sp. At-9b, cystathionine beta-lyase (NCBI: ZP_05732092.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (396 aa)
argDArgD; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa)
yjiR-2YjiR; Hypothetical protein YjiR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732579.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (496 aa)
metBMetB; Cystathionine gamma-synthase; Similar to Pantoea sp. At-9b, O-succinylhomoserine (thiol)-lyase (NCBI: ZP_05730335.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (386 aa)
kblKbl; 2-amino-3-ketobutyrate coenzyme A ligase; Similar to Pantoea sp. At-9b, 2-amino-3-ketobutyrate coenzyme A ligase (NCBI: ZP_05730372.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (344 aa)
tplTpl; Tyrosine phenol-lyase; Similar to >sp|P31011.2|TPL_ENTAG RecName: Full=Tyrosine phenol-lyase; AltName: Full=Beta-tyrosinas,TPL_ENTAG RecName: Full=Tyrosine phenol-lyase; AltName: Full=Beta-tyrosinas(NCBI: P31011.2); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (456 aa)
arnBArnB; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (379 aa)
datDat; Diaminobutyrate--2-oxoglutarate aminotransferase; Similar to Pectobacterium wasabiae WPP163, 2,4-diaminobutyrate 4-transaminase (NCBI: YP_003259732.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (461 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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