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rffA rffA arnB arnB kbl kbl metB metB yjiR-2 yjiR-2 ydcR ydcR glyA1 glyA1 yfdZ yfdZ mocR-2 mocR-2 mocR mocR hisC hisC patB patB aspC aspC ybdL ybdL hemL hemL ddc ddc tyrB tyrB yjiR yjiR avtA avtA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rffARffA; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)
arnBArnB; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (379 aa)
kblKbl; 2-amino-3-ketobutyrate coenzyme A ligase; Similar to Pantoea sp. At-9b, 2-amino-3-ketobutyrate coenzyme A ligase (NCBI: ZP_05730372.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (344 aa)
metBMetB; Cystathionine gamma-synthase; Similar to Pantoea sp. At-9b, O-succinylhomoserine (thiol)-lyase (NCBI: ZP_05730335.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (386 aa)
yjiR-2YjiR; Hypothetical protein YjiR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732579.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (496 aa)
ydcRYdcR; Transcriptional Regulator GntR Family; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase withMHYT sensor (NCBI: ZP_05732079.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (1231 aa)
glyA1GlyA1; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (419 aa)
yfdZYfdZ; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05727637.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (411 aa)
mocR-2MocR; Probable rhizopine catabolism regulatory protein MocR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05730615.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (430 aa)
mocRMocR; Probable rhizopine catabolism regulatory protein MocR; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05730583.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (533 aa)
hisCHisC; Histidinol-phosphate aminotransferase; Similar to Pantoea sp. At-9b, histidinol-phosphate aminotransferase (NCBI: ZP_05729025.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (356 aa)
patBPatB; Putative aminotransferase B; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05728692.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (380 aa)
aspCAspC; Aspartate aminotransferase; Similar to Pantoea sp. At-9b, Aspartate transaminase (NCBI: ZP_05728903.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (396 aa)
ybdLYbdL; Aspartate Aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05732227.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (386 aa)
hemLHemL; Glutamate-1-semialdehyde 2,1-aminomutase; Similar to Cronobacter turicensis, Glutamate-1-semialdehyde 2,1-aminomutase (NCBI: YP_003209148.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (426 aa)
ddcDdc; L-2,4-diaminobutyrate decarboxylase; Similar to Erwinia tasmaniensis Et1/99, Putative decarboxylase (NCBI: YP_001908943.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (530 aa)
tyrBTyrB; Aromatic-amino-acid aminotransferase; Similar to Pantoea sp. At-9b, Aromatic-amino-acid transaminase (NCBI: ZP_05731733.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (411 aa)
yjiRYjiR; Transcriptional Regulator GntR Family; Similar to Pantoea sp. At-9b, transcriptional regulator, GntR family with aminotransferase domain (NCBI: ZP_05732285.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (532 aa)
avtAAvtA; Valine--pyruvate aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05729654.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (416 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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