STRINGSTRING
ompF-2 ompF-2 ompF ompF gltA-2 gltA-2 dxs dxs fsaB fsaB dxr dxr ispH ispH talB talB groS groS groL groL trxA trxA glpF glpF crtE crtE crtX crtX crtY crtY crtI crtI crtZ crtZ ompF-3 ompF-3 rpe rpe mdh mdh tktA tktA ispD ispD ispG ispG yfgL yfgL talA talA acnA acnA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ompF-2OmpF; Outer membrane protein F precursor; Similar to Pantoea sp. At-9b, porin Gram-negative type (NCBI: ZP_05728522.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (363 aa)
ompFOmpF; Outer membrane protein F precursor; Similar to Pantoea sp. At-9b, porin Gram-negative type (NCBI: ZP_05728904.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (376 aa)
gltA-2GltA; Citrate synthase; Similar to Pantoea sp. At-9b, citrate synthase I (NCBI: ZP_05731900.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (449 aa)
dxsDxs; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (633 aa)
fsaBFsaB; Fructose-6-phosphate aldolase 2; Similar to Proteus mirabilis ATCC 29906, possible transaldolase (NCBI: ZP_03841916.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (222 aa)
dxrDxr; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP). (402 aa)
ispHIspH; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. (316 aa)
talBTalB; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (317 aa)
groSGroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. (106 aa)
groLGroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (549 aa)
trxATrxA; Thioredoxin 1; Similar to Pantoea sp. At-9b, thioredoxin (NCBI: ZP_05730660.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the thioredoxin family. (110 aa)
glpFGlpF; Glycerol uptake facilitator protein; Similar to Pantoea sp. At-9b, MIP family channel protein (NCBI: ZP_05730345.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the MIP/aquaporin (TC 1.A.8) family. (282 aa)
crtECrtE; Geranylgeranyl pyrophosphate synthetase; Similar to >sp|P21684.1|CRTE_PANAN RecName: Full=Geranylgeranyl pyrophosphate synthetase; Short=GGPP synthetase; AltName: Full=Farnesyltranstransferas,CRTE_PANAN RecName: Full=Geranylgeranyl pyrophosphate synthetase; Short=GGPP synthetase; AltName: Full=Farnesyltranstransferas(NCBI: P21684.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the FPP/GGPP synthase family. (311 aa)
crtXCrtX; Zeaxanthin glucosyl transferase; Similar to >sp|P21686.1|CRTX_PANAN RecName: Full=Zeaxanthin glucosyltransferas,CRTX_PANAN RecName: Full=Zeaxanthin glucosyltransferas(NCBI: P21686.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UDP-glycosyltransferase family. (431 aa)
crtYCrtY; Lycopene cyclase; Similar to >sp|P21687.1|CRTY_PANAN RecName: Full=Lycopene cyclas,CRTY_PANAN RecName: Full=Lycopene cyclas(NCBI: P21687.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (386 aa)
crtICrtI; Phytoene dehydrogenase; Similar to >sp|P21685.1|CRTI_PANAN RecName: Full=Phytoene dehydrogenase; AltName: Full=Phytoene desaturas,CRTI_PANAN RecName: Full=Phytoene dehydrogenase; AltName: Full=Phytoene desaturas(NCBI: P21685.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (492 aa)
crtZCrtZ; Beta-carotene hydroxylase; Similar to >sp|P21688.1|CRTZ_PANAN RecName: Full=Beta-carotene hydroxylas,CRTZ_PANAN RecName: Full=Beta-carotene hydroxylas(NCBI: P21688.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (175 aa)
ompF-3OmpF; Outer membrane protein F precursor; Similar to Yersinia pseudotuberculosis YPIII, porin (NCBI: YP_001721379.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (359 aa)
rpeRpe; Ribulose-phosphate 3-epimerase; Similar to Pantoea sp. At-9b, ribulose-phosphate 3-epimerase (NCBI: ZP_05731089.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (231 aa)
mdhMdh; Malate dehydrogenase; Similar to Pantoea sp. At-9b, malate dehydrogenase, NAD-dependent (NCBI: ZP_05732131.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Unknown. (114 aa)
tktATktA; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (664 aa)
ispDIspD; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily. (238 aa)
ispGIspG; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (378 aa)
yfgLYfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (393 aa)
talATalA; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. (330 aa)
acnAAcnA; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (893 aa)
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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