STRINGSTRING
AFM22879.1 AFM22879.1 AFM22880.1 AFM22880.1 AFM23368.1 AFM23368.1 AFM24509.1 AFM24509.1 AFM24753.1 AFM24753.1 ku ku AFM25343.1 AFM25343.1 AFM26170.1 AFM26170.1 AFM26171.1 AFM26171.1 AFM26172.1 AFM26172.1 AFM26174.1 AFM26174.1 AFM26175.1 AFM26175.1 AFM26176.1 AFM26176.1 AFM26177.1 AFM26177.1 AFM26308.1 AFM26308.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFM22879.1DNA ligase D/DNA polymerase LigD; PFAM: ATP dependent DNA ligase domain; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain. (536 aa)
AFM22880.1DNA polymerase LigD, polymerase domain protein; PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA ligase D; DNA polymerase LigD, polymerase domain. (309 aa)
AFM23368.1Hypothetical protein. (162 aa)
AFM24509.1PFAM: Protein of unknown function DUF72. (235 aa)
AFM24753.1Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (169 aa)
kuKu protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (275 aa)
AFM25343.1PFAM: Protein of unknown function DUF72. (252 aa)
AFM26170.1Hypothetical protein. (96 aa)
AFM26171.1Hypothetical protein. (143 aa)
AFM26172.1Hypothetical protein. (580 aa)
AFM26174.1Ketosteroid isomerase-like enzyme. (152 aa)
AFM26175.1Lactoylglutathione lyase family protein. (127 aa)
AFM26176.1Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family. (229 aa)
AFM26177.1Hypothetical protein. (85 aa)
AFM26308.1PFAM: Protein of unknown function, DUF488. (184 aa)
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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