(17 nodes) pre-mRNA binding network (Tribolium castaneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A139WC73	Splicing factor U2af 38 kDa subunit-like Protein. (227 aa)
	A0A139WCD4	Transformer-2 sex-determining protein-like Protein. (272 aa)
	A0A139WDI3	Uncharacterized protein. (1496 aa)
	A0A139WHL9	YTH domain-containing family protein 2-like Protein. (590 aa)
	Cpap1-a	Chitin-binding type-2 domain-containing protein. (313 aa)
	D2A0F8_TRICA	Uncharacterized protein. (213 aa)
	D2A1F1_TRICA	RNA-binding protein 41-like Protein. (367 aa)
	GLEAN_10565	MPN domain-containing protein. (2364 aa)
	D6WAL4_TRICA	Pre-mRNA-splicing factor Slu7-like Protein. (521 aa)
	D6WG78_TRICA	U1 small nuclear ribonucleoprotein A-like Protein. (214 aa)
	D6WKS3_TRICA	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like Protein. (424 aa)
	D6WPZ1_TRICA	RNA-binding protein Nova-1-like Protein. (529 aa)
	D6WWI5_TRICA	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (432 aa)
	D6WWM5_TRICA	Pre-mRNA-splicing factor RBM22-like Protein. (420 aa)
	D6X336_TRICA	SLBP_RNA_bind domain-containing protein. (239 aa)
	D6X4F0_TRICA	Splicing factor 1-like Protein. (579 aa)
	D7EHP9_TRICA	YTH domain-containing protein 1-like Protein. (436 aa)

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WC73	A0A139WDI3	A0A139WC73	A0A139WDI3	Splicing factor U2af 38 kDa subunit-like Protein.	Uncharacterized protein.	0.773
A0A139WC73	Cpap1-a	A0A139WC73	A0A139WPI7	Splicing factor U2af 38 kDa subunit-like Protein.	Chitin-binding type-2 domain-containing protein.	0.773
A0A139WC73	D2A0F8_TRICA	A0A139WC73	D2A0F8	Splicing factor U2af 38 kDa subunit-like Protein.	Uncharacterized protein.	0.773
A0A139WC73	D6WAL4_TRICA	A0A139WC73	D6WAL4	Splicing factor U2af 38 kDa subunit-like Protein.	Pre-mRNA-splicing factor Slu7-like Protein.	0.701
A0A139WC73	D6WG78_TRICA	A0A139WC73	D6WG78	Splicing factor U2af 38 kDa subunit-like Protein.	U1 small nuclear ribonucleoprotein A-like Protein.	0.613
A0A139WC73	D6WKS3_TRICA	A0A139WC73	D6WKS3	Splicing factor U2af 38 kDa subunit-like Protein.	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like Protein.	0.615
A0A139WC73	D6WWI5_TRICA	A0A139WC73	D6WWI5	Splicing factor U2af 38 kDa subunit-like Protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.999
A0A139WC73	D6X4F0_TRICA	A0A139WC73	D6X4F0	Splicing factor U2af 38 kDa subunit-like Protein.	Splicing factor 1-like Protein.	0.791
A0A139WC73	GLEAN_10565	A0A139WC73	D2CFW5	Splicing factor U2af 38 kDa subunit-like Protein.	MPN domain-containing protein.	0.525
A0A139WCD4	D6WG78_TRICA	A0A139WCD4	D6WG78	Transformer-2 sex-determining protein-like Protein.	U1 small nuclear ribonucleoprotein A-like Protein.	0.603
A0A139WCD4	D6WWI5_TRICA	A0A139WCD4	D6WWI5	Transformer-2 sex-determining protein-like Protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.511
A0A139WDI3	A0A139WC73	A0A139WDI3	A0A139WC73	Uncharacterized protein.	Splicing factor U2af 38 kDa subunit-like Protein.	0.773
A0A139WDI3	D6WAL4_TRICA	A0A139WDI3	D6WAL4	Uncharacterized protein.	Pre-mRNA-splicing factor Slu7-like Protein.	0.575
A0A139WDI3	D6WKS3_TRICA	A0A139WDI3	D6WKS3	Uncharacterized protein.	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like Protein.	0.773
A0A139WDI3	D6X4F0_TRICA	A0A139WDI3	D6X4F0	Uncharacterized protein.	Splicing factor 1-like Protein.	0.681
A0A139WHL9	D7EHP9_TRICA	A0A139WHL9	D7EHP9	YTH domain-containing family protein 2-like Protein.	YTH domain-containing protein 1-like Protein.	0.420
Cpap1-a	A0A139WC73	A0A139WPI7	A0A139WC73	Chitin-binding type-2 domain-containing protein.	Splicing factor U2af 38 kDa subunit-like Protein.	0.773
Cpap1-a	D6WAL4_TRICA	A0A139WPI7	D6WAL4	Chitin-binding type-2 domain-containing protein.	Pre-mRNA-splicing factor Slu7-like Protein.	0.575
Cpap1-a	D6WKS3_TRICA	A0A139WPI7	D6WKS3	Chitin-binding type-2 domain-containing protein.	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like Protein.	0.773
Cpap1-a	D6X4F0_TRICA	A0A139WPI7	D6X4F0	Chitin-binding type-2 domain-containing protein.	Splicing factor 1-like Protein.	0.681