Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CA264_00980
Unannotated protein. (517 aa)
CA264_00990
Unannotated protein. (490 aa)
CA264_00995
Unannotated protein. (265 aa)
CA264_01000
Unannotated protein. (436 aa)
CA264_01005
Unannotated protein. (379 aa)
Your Current Organism:
Pontibacter actiniarum
NCBI taxonomy Id: 709015 Other names: P. actiniarum DSM 19842, Pontibacter actiniarum DSM 19842, Pontibacter actiniarum KMM 6156, Pontibacter actiniarum str. DSM 19842, Pontibacter actiniarum strain DSM 19842