STRINGSTRING
ADY34477.1 ADY34477.1 ADY33876.1 ADY33876.1 ADY33750.1 ADY33750.1 ADY33570.1 ADY33570.1 ADY33505.1 ADY33505.1 recF recF ADY32954.1 ADY32954.1 ADY32904.1 ADY32904.1 recR recR ADY32696.1 ADY32696.1 mraZ mraZ ADY31825.1 ADY31825.1 ADY31791.1 ADY31791.1 ADY32310.1 ADY32310.1 ADY31403.1 ADY31403.1 ADY31385.1 ADY31385.1 ADY31326.1 ADY31326.1 ADY32243.1 ADY32243.1 nth nth ADY31844.1 ADY31844.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADY34477.1KEGG: cpi:Cpin_7301 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3127). (124 aa)
ADY33876.1COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013023: IPR013116: IPR000506; KEGG: cpi:Cpin_1923 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase. (348 aa)
ADY33750.1COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: coc:Coch_0327 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: DNA-binding DPS protein; PFAM: Ferritin-like domain; Belongs to the Dps family. (159 aa)
ADY33570.1KEGG: smb:smi_1368 hypothetical protein; SPTR: Putative uncharacterized protein. (338 aa)
ADY33505.1DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (237 aa)
recFDNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (364 aa)
ADY32954.1ParB domain protein nuclease; COGs: COG1475 transcriptional regulator protein; InterPro IPR003115; KEGG: bfs:BF2181 hypothetical protein; SMART: ParB-like nuclease; SPTR: Putative uncharacterized protein; PFAM: ParB-like nuclease domain. (170 aa)
ADY32904.1COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: ava:Ava_2868 ferritin and Dps; PFAM: Ferritin/Dps protein; SPTR: Ferritin and Dps; PFAM: Ferritin-like domain; Belongs to the Dps family. (162 aa)
recRRecombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (203 aa)
ADY32696.1COGs: COG0514 Superfamily II DNA helicase; InterProIPR014001: IPR001650: IPR002121: IPR011545: IPR 018982: IPR006293: IPR018329; KEGG: bvu:BVU_0442 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: Putative uncharacterized protein; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: He [...] (727 aa)
mraZProtein mraZ; COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR020603: IPR003444; KEGG: gfo:GFO_2776 MraZ protein; PFAM: MraZ domain; SPTR: Protein mraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein; Belongs to the MraZ family. (148 aa)
ADY31825.1ATP-dependent DNA helicase, RecQ family; COGs: COG0514 Superfamily II DNA helicase; InterPro IPR018329: IPR014001: IPR001650: IPR011545; KEGG: bfs:BF3706 putative DEAD box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase recQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family. (633 aa)
ADY31791.1KEGG: chu:CHU_0571 hypothetical protein; SPTR: Putative uncharacterized protein. (348 aa)
ADY32310.1DNA-cytosine methyltransferase; COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: nmi:NMO_0153 putative type II DNA modification methylase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Modification methylase HgiDII; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (359 aa)
ADY31403.1ATP-dependent DNA helicase, RecQ family; COGs: COG0514 Superfamily II DNA helicase; InterProIPR018329: IPR014001: IPR001650: IPR011545: IPR 000212; KEGG: dsy:DSY0718 hypothetical protein; PFAM: DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA helicase, UvrD/REP type; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; UvrD/REP helicase; DEAD/DEAH box h [...] (1655 aa)
ADY31385.1InterPro IPR014127; KEGG: fbc:FB2170_10686 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757. (254 aa)
ADY31326.1COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344: IPR000424; KEGG: bfs:BF1571 putative single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb). (106 aa)
ADY32243.1COGs: COG2406 Protein distantly related to ferritins; InterPro IPR008331; KEGG: bth:BT_3823 hypothetical protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin and Dps; PFAM: Ferritin-like domain. (170 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (212 aa)
ADY31844.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (555 aa)
Your Current Organism:
Odoribacter splanchnicus
NCBI taxonomy Id: 709991
Other names: O. splanchnicus DSM 20712, Odoribacter splanchnicus DSM 20712, Odoribacter splanchnicus str. DSM 20712, Odoribacter splanchnicus strain DSM 20712
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