(30 nodes) RNA Polymerase II Transcription Termination network (Eucalyptus grandis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_K01050	RRM domain-containing protein. (361 aa)
	EUGRSUZ_K02309	NAB domain-containing protein. (405 aa)
	EUGRSUZ_K03190	Uncharacterized protein. (208 aa)
	EUGRSUZ_J00624	C2H2-type domain-containing protein. (776 aa)
	EUGRSUZ_J00859	Uncharacterized protein. (411 aa)
	EUGRSUZ_J01600	RRM domain-containing protein. (290 aa)
	EUGRSUZ_G02557	Uncharacterized protein. (709 aa)
	EUGRSUZ_G02919	RRM domain-containing protein. (296 aa)
	EUGRSUZ_F01999	WD_REPEATS_REGION domain-containing protein. (375 aa)
	EUGRSUZ_F02336	Uncharacterized protein. (874 aa)
	EUGRSUZ_E01180	Uncharacterized protein. (333 aa)
	EUGRSUZ_E01190	Uncharacterized protein; Belongs to the DEAD box helicase family. (430 aa)
	EUGRSUZ_E03954	Uncharacterized protein. (608 aa)
	EUGRSUZ_D02531	Uncharacterized protein. (241 aa)
	EUGRSUZ_C00634	RNA_GG_bind domain-containing protein. (259 aa)
	EUGRSUZ_C01135	Uncharacterized protein. (542 aa)
	EUGRSUZ_C01754	Protein kinase domain-containing protein. (680 aa)
	EUGRSUZ_C01752	Protein kinase domain-containing protein. (537 aa)
	EUGRSUZ_C01758	Protein kinase domain-containing protein. (710 aa)
	EUGRSUZ_C01759	Protein kinase domain-containing protein. (518 aa)
	EUGRSUZ_C01757	Protein kinase domain-containing protein. (284 aa)
	EUGRSUZ_C01749	Uncharacterized protein. (430 aa)
	EUGRSUZ_C02784	Uncharacterized protein. (543 aa)
	EUGRSUZ_C03417	WD_REPEATS_REGION domain-containing protein. (336 aa)
	EUGRSUZ_B02389	RRM domain-containing protein. (252 aa)
	EUGRSUZ_B02697	Uncharacterized protein. (1851 aa)
	A0A059D9L3	Uncharacterized protein. (427 aa)
	EUGRSUZ_B03714	MIF4G domain-containing protein. (327 aa)
	A0A059DAD7	MIF4G_like domain-containing protein. (84 aa)
	EUGRSUZ_A01204	Uncharacterized protein. (223 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059D9L3	A0A059DAD7	A0A059D9L3	A0A059DAD7	Uncharacterized protein.	MIF4G_like domain-containing protein.	0.643
A0A059D9L3	EUGRSUZ_A01204	A0A059D9L3	A0A059DF68	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A059D9L3	EUGRSUZ_B02389	A0A059D9L3	A0A059D538	Uncharacterized protein.	RRM domain-containing protein.	0.836
A0A059D9L3	EUGRSUZ_B02697	A0A059D9L3	A0A059D5Z7	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A059D9L3	EUGRSUZ_B03714	A0A059D9L3	A0A059D9T5	Uncharacterized protein.	MIF4G domain-containing protein.	0.859
A0A059D9L3	EUGRSUZ_C00634	A0A059D9L3	A0A059CMP0	Uncharacterized protein.	RNA_GG_bind domain-containing protein.	0.876
A0A059D9L3	EUGRSUZ_C01749	A0A059D9L3	A0A059CR29	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A059D9L3	EUGRSUZ_C01752	A0A059D9L3	A0A059CPU8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.555
A0A059D9L3	EUGRSUZ_C01754	A0A059D9L3	A0A059CPL8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.555
A0A059D9L3	EUGRSUZ_C01757	A0A059D9L3	A0A059CQD9	Uncharacterized protein.	Protein kinase domain-containing protein.	0.555
A0A059D9L3	EUGRSUZ_C01758	A0A059D9L3	A0A059CPV6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.555
A0A059D9L3	EUGRSUZ_C01759	A0A059D9L3	A0A059CPW3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.555
A0A059D9L3	EUGRSUZ_C02784	A0A059D9L3	A0A059CSQ3	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A059D9L3	EUGRSUZ_C03417	A0A059D9L3	A0A059CV11	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.579
A0A059D9L3	EUGRSUZ_D02531	A0A059D9L3	A0A059CJK5	Uncharacterized protein.	Uncharacterized protein.	0.774
A0A059D9L3	EUGRSUZ_E01180	A0A059D9L3	A0A059C3A0	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A059D9L3	EUGRSUZ_E01190	A0A059D9L3	A0A059C3A7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.540
A0A059D9L3	EUGRSUZ_E03954	A0A059D9L3	A0A059CAC3	Uncharacterized protein.	Uncharacterized protein.	0.696
A0A059D9L3	EUGRSUZ_F01999	A0A059D9L3	A0A059BRQ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.709
A0A059D9L3	EUGRSUZ_F02336	A0A059D9L3	A0A059BRZ1	Uncharacterized protein.	Uncharacterized protein.	0.830