(10 nodes) ta-siRNA processing network (Eucalyptus grandis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_C02779	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (967 aa)
	EUGRSUZ_K01507	Uncharacterized protein. (513 aa)
	EUGRSUZ_J00624	C2H2-type domain-containing protein. (776 aa)
	EUGRSUZ_G02476	Uncharacterized protein; Belongs to the argonaute family. (1016 aa)
	EUGRSUZ_F01999	WD_REPEATS_REGION domain-containing protein. (375 aa)
	EUGRSUZ_E03316	DUF1771 domain-containing protein. (488 aa)
	EUGRSUZ_E03954	Uncharacterized protein. (608 aa)
	EUGRSUZ_D00630	DUF1771 domain-containing protein. (355 aa)
	EUGRSUZ_C02780	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1195 aa)
	EUGRSUZ_C02782	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1196 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_C02779	EUGRSUZ_C02780	A0A059CSP6	A0A059CSG6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.546
EUGRSUZ_C02779	EUGRSUZ_C02782	A0A059CSP6	A0A059CTZ5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.546
EUGRSUZ_C02780	EUGRSUZ_C02779	A0A059CSG6	A0A059CSP6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.546
EUGRSUZ_C02780	EUGRSUZ_C02782	A0A059CSG6	A0A059CTZ5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.544
EUGRSUZ_C02782	EUGRSUZ_C02779	A0A059CTZ5	A0A059CSP6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.546
EUGRSUZ_C02782	EUGRSUZ_C02780	A0A059CTZ5	A0A059CSG6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.544
EUGRSUZ_E03954	EUGRSUZ_F01999	A0A059CAC3	A0A059BRQ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
EUGRSUZ_F01999	EUGRSUZ_E03954	A0A059BRQ3	A0A059CAC3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
EUGRSUZ_G02476	EUGRSUZ_K01507	A0A059BH06	A0A059A1Z6	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.571
EUGRSUZ_K01507	EUGRSUZ_G02476	A0A059A1Z6	A0A059BH06	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.571