(92 nodes) mRNA transport network (Eucalyptus grandis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_K03190	Uncharacterized protein. (208 aa)
	EUGRSUZ_L00343	Peptidase S59 domain-containing protein. (1022 aa)
	A0A059A2U6	Nuclear pore protein. (133 aa)
	EUGRSUZ_K02007	Nuclear pore protein. (288 aa)
	EUGRSUZ_K01999	Nuclear pore protein. (530 aa)
	EUGRSUZ_K02008	Nuclear pore protein. (165 aa)
	EUGRSUZ_K01689	ANAPC4_WD40 domain-containing protein. (456 aa)
	A0A059A3T0	Nuclear pore protein. (680 aa)
	EUGRSUZ_K01765	Nuclear pore protein. (462 aa)
	EUGRSUZ_K02306	Uncharacterized protein. (542 aa)
	EUGRSUZ_K02038	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (883 aa)
	EUGRSUZ_K02338	Uncharacterized protein. (535 aa)
	EUGRSUZ_K02417	Uncharacterized protein. (519 aa)
	EUGRSUZ_K02857	Uncharacterized protein. (72 aa)
	EUGRSUZ_K03188	Uncharacterized protein. (361 aa)
	EUGRSUZ_J00217	Uncharacterized protein. (859 aa)
	EUGRSUZ_J00304	Uncharacterized protein. (1328 aa)
	EUGRSUZ_J00743	RRM domain-containing protein. (247 aa)
	EUGRSUZ_J00859	Uncharacterized protein. (411 aa)
	EUGRSUZ_J01742	Uncharacterized protein. (467 aa)
	EUGRSUZ_J01744	Uncharacterized protein. (1664 aa)
	EUGRSUZ_J01894	RanBD1 domain-containing protein. (296 aa)
	EUGRSUZ_J01600	RRM domain-containing protein. (290 aa)
	EUGRSUZ_J01832	Uncharacterized protein. (167 aa)
	EUGRSUZ_J02245	Uncharacterized protein. (1283 aa)
	EUGRSUZ_J03099	WD_REPEATS_REGION domain-containing protein. (349 aa)
	EUGRSUZ_J02948	Nuclear pore complex protein NUP35. (329 aa)
	EUGRSUZ_J03097	WD_REPEATS_REGION domain-containing protein. (349 aa)
	EUGRSUZ_I00318	RPOL4c domain-containing protein. (138 aa)
	EUGRSUZ_I01648	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (110 aa)
	EUGRSUZ_I02711	Mago-bind domain-containing protein. (231 aa)
	EUGRSUZ_I02689	WD_REPEATS_REGION domain-containing protein. (251 aa)
	EUGRSUZ_I02778	Smg4_UPF3 domain-containing protein. (486 aa)
	EUGRSUZ_H00136	Uncharacterized protein. (456 aa)
	EUGRSUZ_H01972	Uncharacterized protein. (505 aa)
	EUGRSUZ_H03640	PCI domain-containing protein. (1674 aa)
	EUGRSUZ_G00034	DUF5311 domain-containing protein. (1150 aa)
	EUGRSUZ_G02106	Uncharacterized protein. (1492 aa)
	EUGRSUZ_G02557	Uncharacterized protein. (709 aa)
	EUGRSUZ_G02919	RRM domain-containing protein. (296 aa)
	EUGRSUZ_G03187	Uncharacterized protein. (458 aa)
	EUGRSUZ_F01999	WD_REPEATS_REGION domain-containing protein. (375 aa)
	EUGRSUZ_F02336	Uncharacterized protein. (874 aa)
	EUGRSUZ_F02948	RanBD1 domain-containing protein. (417 aa)
	EUGRSUZ_F03010	Btz domain-containing protein. (580 aa)
	EUGRSUZ_F03948	Peptidase S59 domain-containing protein. (1064 aa)
	EUGRSUZ_F04480	TPR_MLP1_2 domain-containing protein. (2048 aa)
	EUGRSUZ_E01178	Uncharacterized protein; Belongs to the DEAD box helicase family. (358 aa)
	A0A059C2P1	Helicase C-terminal domain-containing protein. (66 aa)
	EUGRSUZ_E01189	Uncharacterized protein. (333 aa)
	EUGRSUZ_E01176	Uncharacterized protein; Belongs to the DEAD box helicase family. (386 aa)
	A0A059C2Z5	Helicase C-terminal domain-containing protein. (152 aa)
	EUGRSUZ_E01180	Uncharacterized protein. (333 aa)
	A0A059C3A3	Uncharacterized protein. (205 aa)
	EUGRSUZ_E01190	Uncharacterized protein; Belongs to the DEAD box helicase family. (430 aa)
	EUGRSUZ_E01187	Uncharacterized protein. (258 aa)
	EUGRSUZ_E01199	Uncharacterized protein; Belongs to the DEAD box helicase family. (323 aa)
	EUGRSUZ_E01623	Uncharacterized protein. (115 aa)
	EUGRSUZ_E01181	Uncharacterized protein; Belongs to the DEAD box helicase family. (375 aa)
	A0A059C467	Helicase C-terminal domain-containing protein. (122 aa)
	EUGRSUZ_E03954	Uncharacterized protein. (608 aa)
	EUGRSUZ_D01223	Uncharacterized protein. (152 aa)
	EUGRSUZ_D01715	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (324 aa)
	EUGRSUZ_D01927	RanBD1 domain-containing protein. (389 aa)
	EUGRSUZ_D02270	Uncharacterized protein; Belongs to the DEAD box helicase family. (514 aa)
	EUGRSUZ_D02512	Nsp1_C domain-containing protein. (779 aa)
	EUGRSUZ_D02531	Uncharacterized protein. (241 aa)
	EUGRSUZ_C00551	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (648 aa)
	EUGRSUZ_C00596	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (714 aa)
	EUGRSUZ_C00900	PCI domain-containing protein. (414 aa)
	EUGRSUZ_C01135	Uncharacterized protein. (542 aa)
	EUGRSUZ_C01754	Protein kinase domain-containing protein. (680 aa)
	EUGRSUZ_C01752	Protein kinase domain-containing protein. (537 aa)
	EUGRSUZ_C01758	Protein kinase domain-containing protein. (710 aa)
	EUGRSUZ_C01759	Protein kinase domain-containing protein. (518 aa)
	EUGRSUZ_C01757	Protein kinase domain-containing protein. (284 aa)
	EUGRSUZ_C01749	Uncharacterized protein. (430 aa)
	EUGRSUZ_C02784	Uncharacterized protein. (543 aa)
	EUGRSUZ_C03417	WD_REPEATS_REGION domain-containing protein. (336 aa)
	EUGRSUZ_C04218	Uncharacterized protein. (1879 aa)
	EUGRSUZ_B02236	RanBD1 domain-containing protein. (223 aa)
	EUGRSUZ_B02389	RRM domain-containing protein. (252 aa)
	EUGRSUZ_B02697	Uncharacterized protein. (1851 aa)
	A0A059D7P7	Uncharacterized protein. (312 aa)
	A0A059D875	Uncharacterized protein. (404 aa)
	EUGRSUZ_B03481	Nup54 domain-containing protein. (366 aa)
	A0A059D9L3	Uncharacterized protein. (427 aa)
	EUGRSUZ_B03714	MIF4G domain-containing protein. (327 aa)
	A0A059DAD7	MIF4G_like domain-containing protein. (84 aa)
	EUGRSUZ_A01048	Uncharacterized protein. (1315 aa)
	EUGRSUZ_A01204	Uncharacterized protein. (223 aa)
	EUGRSUZ_A02966	Importin N-terminal domain-containing protein. (1076 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059A2U6	A0A059A3T0	A0A059A2U6	A0A059A3T0	Nuclear pore protein.	Nuclear pore protein.	0.509
A0A059A2U6	A0A059D7P7	A0A059A2U6	A0A059D7P7	Nuclear pore protein.	Uncharacterized protein.	0.642
A0A059A2U6	A0A059D875	A0A059A2U6	A0A059D875	Nuclear pore protein.	Uncharacterized protein.	0.642
A0A059A2U6	A0A059D9L3	A0A059A2U6	A0A059D9L3	Nuclear pore protein.	Uncharacterized protein.	0.457
A0A059A2U6	A0A059DAD7	A0A059A2U6	A0A059DAD7	Nuclear pore protein.	MIF4G_like domain-containing protein.	0.457
A0A059A2U6	EUGRSUZ_B02236	A0A059A2U6	A0A059D4D4	Nuclear pore protein.	RanBD1 domain-containing protein.	0.759
A0A059A2U6	EUGRSUZ_B02389	A0A059A2U6	A0A059D538	Nuclear pore protein.	RRM domain-containing protein.	0.483
A0A059A2U6	EUGRSUZ_B03481	A0A059A2U6	A0A059D8U5	Nuclear pore protein.	Nup54 domain-containing protein.	0.930
A0A059A2U6	EUGRSUZ_B03714	A0A059A2U6	A0A059D9T5	Nuclear pore protein.	MIF4G domain-containing protein.	0.457
A0A059A2U6	EUGRSUZ_C00551	A0A059A2U6	A0A059CLQ9	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.815
A0A059A2U6	EUGRSUZ_C00596	A0A059A2U6	A0A059CMJ0	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.815
A0A059A2U6	EUGRSUZ_C04218	A0A059A2U6	A0A059CWU9	Nuclear pore protein.	Uncharacterized protein.	0.952
A0A059A2U6	EUGRSUZ_D01715	A0A059A2U6	A0A059CGI5	Nuclear pore protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.932
A0A059A2U6	EUGRSUZ_D01927	A0A059A2U6	A0A059CGM9	Nuclear pore protein.	RanBD1 domain-containing protein.	0.726
A0A059A2U6	EUGRSUZ_F02948	A0A059A2U6	A0A059BTT2	Nuclear pore protein.	RanBD1 domain-containing protein.	0.759
A0A059A2U6	EUGRSUZ_F03948	A0A059A2U6	A0A059BX19	Nuclear pore protein.	Peptidase S59 domain-containing protein.	0.818
A0A059A2U6	EUGRSUZ_F04480	A0A059A2U6	A0A059BZN9	Nuclear pore protein.	TPR_MLP1_2 domain-containing protein.	0.780
A0A059A2U6	EUGRSUZ_G00034	A0A059A2U6	A0A059B9I4	Nuclear pore protein.	DUF5311 domain-containing protein.	0.875
A0A059A2U6	EUGRSUZ_G02106	A0A059A2U6	A0A059BEG9	Nuclear pore protein.	Uncharacterized protein.	0.947
A0A059A2U6	EUGRSUZ_G02919	A0A059A2U6	A0A059BHL8	Nuclear pore protein.	RRM domain-containing protein.	0.483