16 items (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_K01360	DAHP_synth_1 domain-containing protein. (312 aa)
	EUGRSUZ_K00135	Glyco_transf_64 domain-containing protein. (354 aa)
	EUGRSUZ_J01378	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (533 aa)
	EUGRSUZ_J03159	Uncharacterized protein. (416 aa)
	EUGRSUZ_I01979	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (535 aa)
	A0A059B0M1	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (168 aa)
	A0A059B0Y8	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (239 aa)
	EUGRSUZ_H02475	Uncharacterized protein. (572 aa)
	EUGRSUZ_G03038	Glyco_transf_64 domain-containing protein. (331 aa)
	EUGRSUZ_F01129	Uncharacterized protein. (608 aa)
	EUGRSUZ_E00084	Glycosyltransferase. (356 aa)
	EUGRSUZ_E00210	Methyltransferase. (596 aa)
	EUGRSUZ_E01147	Uncharacterized protein. (638 aa)
	EUGRSUZ_D00618	Uncharacterized protein. (598 aa)
	EUGRSUZ_D02247	Methyltransferase. (579 aa)
	EUGRSUZ_C00086	Uncharacterized protein. (292 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_D00618	EUGRSUZ_H02475	A0A059CCP4	A0A059B1D5	Uncharacterized protein.	Uncharacterized protein.	0.414
EUGRSUZ_D02247	EUGRSUZ_H02475	A0A059CJC1	A0A059B1D5	Methyltransferase.	Uncharacterized protein.	0.404
EUGRSUZ_E00210	EUGRSUZ_H02475	A0A059C0E7	A0A059B1D5	Methyltransferase.	Uncharacterized protein.	0.400
EUGRSUZ_F01129	EUGRSUZ_H02475	A0A059BNR8	A0A059B1D5	Uncharacterized protein.	Uncharacterized protein.	0.401
EUGRSUZ_F01129	EUGRSUZ_I01979	A0A059BNR8	A0A059AS27	Uncharacterized protein.	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	0.400
EUGRSUZ_H02475	EUGRSUZ_D00618	A0A059B1D5	A0A059CCP4	Uncharacterized protein.	Uncharacterized protein.	0.414
EUGRSUZ_H02475	EUGRSUZ_D02247	A0A059B1D5	A0A059CJC1	Uncharacterized protein.	Methyltransferase.	0.404
EUGRSUZ_H02475	EUGRSUZ_E00210	A0A059B1D5	A0A059C0E7	Uncharacterized protein.	Methyltransferase.	0.400
EUGRSUZ_H02475	EUGRSUZ_F01129	A0A059B1D5	A0A059BNR8	Uncharacterized protein.	Uncharacterized protein.	0.401
EUGRSUZ_I01979	EUGRSUZ_F01129	A0A059AS27	A0A059BNR8	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.400