(64 nodes) Cul4-RING E3 ubiquitin ligase complex network (Eucalyptus grandis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_K01052	WD_REPEATS_REGION domain-containing protein. (452 aa)
	EUGRSUZ_K00737	Uncharacterized protein. (687 aa)
	EUGRSUZ_K00315	Uncharacterized protein. (1001 aa)
	EUGRSUZ_L01941	Uncharacterized protein. (362 aa)
	EUGRSUZ_B03666	WD_REPEATS_REGION domain-containing protein. (277 aa)
	EUGRSUZ_B00711	Uncharacterized protein. (1213 aa)
	EUGRSUZ_C03892	WD_REPEATS_REGION domain-containing protein. (442 aa)
	EUGRSUZ_C03980	LisH domain-containing protein. (1885 aa)
	EUGRSUZ_C02892	Uncharacterized protein. (477 aa)
	EUGRSUZ_C01582	Uncharacterized protein. (474 aa)
	EUGRSUZ_C01581	Uncharacterized protein. (480 aa)
	EUGRSUZ_C01244	WD_REPEATS_REGION domain-containing protein. (312 aa)
	EUGRSUZ_C00403	WD_REPEATS_REGION domain-containing protein. (422 aa)
	EUGRSUZ_C00611	Uncharacterized protein. (538 aa)
	EUGRSUZ_C00279	Uncharacterized protein. (1196 aa)
	EUGRSUZ_D01772	Uncharacterized protein. (1054 aa)
	EUGRSUZ_D01370	WD_REPEATS_REGION domain-containing protein. (247 aa)
	EUGRSUZ_D01376	WD_REPEATS_REGION domain-containing protein. (514 aa)
	EUGRSUZ_D00852	Uncharacterized protein. (470 aa)
	EUGRSUZ_D00851	Uncharacterized protein. (466 aa)
	EUGRSUZ_D00190	WD_REPEATS_REGION domain-containing protein. (534 aa)
	EUGRSUZ_E04234	WD_REPEATS_REGION domain-containing protein. (444 aa)
	EUGRSUZ_E02427	WD_REPEATS_REGION domain-containing protein. (341 aa)
	EUGRSUZ_E02414	CULLIN_2 domain-containing protein; Belongs to the cullin family. (801 aa)
	EUGRSUZ_E00073	WD_REPEATS_REGION domain-containing protein. (416 aa)
	EUGRSUZ_F03647	WD_REPEATS_REGION domain-containing protein. (442 aa)
	EUGRSUZ_F03385	WD_REPEATS_REGION domain-containing protein. (447 aa)
	EUGRSUZ_F03549	WD_REPEATS_REGION domain-containing protein. (410 aa)
	EUGRSUZ_F03030	Uncharacterized protein. (480 aa)
	EUGRSUZ_F02126	Uncharacterized protein. (752 aa)
	EUGRSUZ_F00494	WD_REPEATS_REGION domain-containing protein. (450 aa)
	EUGRSUZ_G03357	WD_REPEATS_REGION domain-containing protein. (477 aa)
	EUGRSUZ_F00083	Uncharacterized protein. (447 aa)
	EUGRSUZ_G03431	WD_REPEATS_REGION domain-containing protein. (413 aa)
	A0A059BJ62	WD_REPEATS_REGION domain-containing protein. (83 aa)
	EUGRSUZ_G03346	WD_REPEATS_REGION domain-containing protein. (142 aa)
	EUGRSUZ_G01796	Uncharacterized protein. (490 aa)
	EUGRSUZ_G01293	WD_REPEATS_REGION domain-containing protein. (827 aa)
	EUGRSUZ_H04894	WD_REPEATS_REGION domain-containing protein. (299 aa)
	EUGRSUZ_H04403	WD_REPEATS_REGION domain-containing protein. (757 aa)
	EUGRSUZ_H04037	Uncharacterized protein. (1738 aa)
	EUGRSUZ_H01268	Uncharacterized protein. (481 aa)
	EUGRSUZ_H01047	Uncharacterized protein. (1826 aa)
	EUGRSUZ_H00383	WD_REPEATS_REGION domain-containing protein. (355 aa)
	EUGRSUZ_H00461	WD_REPEATS_REGION domain-containing protein. (435 aa)
	EUGRSUZ_H00387	WD_REPEATS_REGION domain-containing protein. (201 aa)
	EUGRSUZ_I02689	WD_REPEATS_REGION domain-containing protein. (251 aa)
	EUGRSUZ_I02455	Uncharacterized protein. (702 aa)
	EUGRSUZ_I01460	Uncharacterized protein. (499 aa)
	EUGRSUZ_I01417	WD_REPEATS_REGION domain-containing protein. (408 aa)
	EUGRSUZ_I00742	Uncharacterized protein. (620 aa)
	EUGRSUZ_J03097	WD_REPEATS_REGION domain-containing protein. (349 aa)
	EUGRSUZ_J03099	WD_REPEATS_REGION domain-containing protein. (349 aa)
	EUGRSUZ_J02238	WD_REPEATS_REGION domain-containing protein. (512 aa)
	EUGRSUZ_J01034	Uncharacterized protein. (382 aa)
	EUGRSUZ_J01030	WD_REPEATS_REGION domain-containing protein. (537 aa)
	EUGRSUZ_K03421	LEC14B homolog; Belongs to the WD repeat LEC14B family. (491 aa)
	EUGRSUZ_K00589	WD_REPEATS_REGION domain-containing protein. (1401 aa)
	EUGRSUZ_B01219	Uncharacterized protein. (479 aa)
	EUGRSUZ_B01223	Uncharacterized protein. (244 aa)
	EUGRSUZ_B01222	WD_REPEATS_REGION domain-containing protein. (439 aa)
	EUGRSUZ_B02258	WD_REPEATS_REGION domain-containing protein. (569 aa)
	EUGRSUZ_B02209	Uncharacterized protein. (1433 aa)
	EUGRSUZ_A01580	Uncharacterized protein. (459 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059BJ62	EUGRSUZ_C03892	A0A059BJ62	A0A059CWC0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.485
A0A059BJ62	EUGRSUZ_D00190	A0A059BJ62	A0A059CCY4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.485
A0A059BJ62	EUGRSUZ_J01030	A0A059BJ62	A0A059ABR7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.523
EUGRSUZ_A01580	EUGRSUZ_B01219	A0A059DFV3	A0A059D0X3	Uncharacterized protein.	Uncharacterized protein.	0.576
EUGRSUZ_A01580	EUGRSUZ_B01222	A0A059DFV3	A0A059D2D8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.576
EUGRSUZ_A01580	EUGRSUZ_B01223	A0A059DFV3	A0A059D1T0	Uncharacterized protein.	Uncharacterized protein.	0.576
EUGRSUZ_A01580	EUGRSUZ_B02258	A0A059DFV3	A0A059D4G6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.713
EUGRSUZ_A01580	EUGRSUZ_C00279	A0A059DFV3	A0A059CKB8	Uncharacterized protein.	Uncharacterized protein.	0.549
EUGRSUZ_A01580	EUGRSUZ_C00403	A0A059DFV3	A0A059CLE7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.570
EUGRSUZ_A01580	EUGRSUZ_C00611	A0A059DFV3	A0A059CLA8	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_A01580	EUGRSUZ_C01581	A0A059DFV3	A0A059CPR6	Uncharacterized protein.	Uncharacterized protein.	0.555
EUGRSUZ_A01580	EUGRSUZ_C01582	A0A059DFV3	A0A059CQK3	Uncharacterized protein.	Uncharacterized protein.	0.555
EUGRSUZ_A01580	EUGRSUZ_C02892	A0A059DFV3	A0A059CSV0	Uncharacterized protein.	Uncharacterized protein.	0.554
EUGRSUZ_A01580	EUGRSUZ_C03980	A0A059DFV3	A0A059CVT0	Uncharacterized protein.	LisH domain-containing protein.	0.549
EUGRSUZ_A01580	EUGRSUZ_D00851	A0A059DFV3	A0A059CDE8	Uncharacterized protein.	Uncharacterized protein.	0.557
EUGRSUZ_A01580	EUGRSUZ_D00852	A0A059DFV3	A0A059CE07	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_A01580	EUGRSUZ_E02414	A0A059DFV3	A0A059C6I5	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.439
EUGRSUZ_A01580	EUGRSUZ_F00083	A0A059DFV3	A0A059BJM9	Uncharacterized protein.	Uncharacterized protein.	0.742
EUGRSUZ_A01580	EUGRSUZ_F02126	A0A059DFV3	A0A059BQP3	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_A01580	EUGRSUZ_F03030	A0A059DFV3	A0A059BU19	Uncharacterized protein.	Uncharacterized protein.	0.554