41 items (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A059C8G8	Uncharacterized protein. (255 aa)
	EUGRSUZ_E02974	Uncharacterized protein. (169 aa)
	EUGRSUZ_E03474	Uncharacterized protein. (621 aa)
	EUGRSUZ_F00078	Uncharacterized protein. (107 aa)
	EUGRSUZ_H02626	DUF659 domain-containing protein. (705 aa)
	EUGRSUZ_K02876	Uncharacterized protein. (568 aa)
	A0A058ZW76	Uncharacterized protein. (260 aa)
	A0A058ZV19	Uncharacterized protein. (209 aa)
	EUGRSUZ_L02022	Uncharacterized protein. (591 aa)
	EUGRSUZ_L02421	Uncharacterized protein. (361 aa)
	EUGRSUZ_E03482	Uncharacterized protein. (245 aa)
	EUGRSUZ_E04002	Uncharacterized protein. (463 aa)
	EUGRSUZ_C00024	Uncharacterized protein. (608 aa)
	EUGRSUZ_D02666	Uncharacterized protein. (317 aa)
	EUGRSUZ_C00185	Uncharacterized protein. (635 aa)
	EUGRSUZ_C00025	Uncharacterized protein. (407 aa)
	EUGRSUZ_C04049	Uncharacterized protein. (602 aa)
	EUGRSUZ_B00342	Uncharacterized protein. (540 aa)
	EUGRSUZ_B00745	Uncharacterized protein. (467 aa)
	EUGRSUZ_B00744	Uncharacterized protein. (469 aa)
	EUGRSUZ_B01678	Uncharacterized protein. (93 aa)
	EUGRSUZ_A00448	Uncharacterized protein. (289 aa)
	EUGRSUZ_A00443	Uncharacterized protein. (256 aa)
	EUGRSUZ_A00457	Uncharacterized protein. (446 aa)
	EUGRSUZ_A00446	Uncharacterized protein. (988 aa)
	EUGRSUZ_A00470	Uncharacterized protein. (285 aa)
	EUGRSUZ_E01952	Uncharacterized protein. (295 aa)
	EUGRSUZ_E02343	BED-type domain-containing protein. (823 aa)
	EUGRSUZ_E01956	Uncharacterized protein. (249 aa)
	EUGRSUZ_E02337	Uncharacterized protein. (241 aa)
	EUGRSUZ_E02971	Dimer_Tnp_hAT domain-containing protein. (288 aa)
	EUGRSUZ_E02625	Uncharacterized protein. (231 aa)
	EUGRSUZ_E02969	Uncharacterized protein. (251 aa)
	EUGRSUZ_E02975	Uncharacterized protein. (285 aa)
	EUGRSUZ_E03487	Uncharacterized protein. (293 aa)
	EUGRSUZ_E03496	Uncharacterized protein. (539 aa)
	EUGRSUZ_E01959	Uncharacterized protein. (352 aa)
	EUGRSUZ_E03471	Uncharacterized protein. (388 aa)
	EUGRSUZ_E03479	Uncharacterized protein. (295 aa)
	EUGRSUZ_E03489	Uncharacterized protein. (521 aa)
	EUGRSUZ_E03495	Uncharacterized protein. (501 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A058ZV19	EUGRSUZ_D02666	A0A058ZV19	A0A059CK59	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A058ZV19	EUGRSUZ_E01959	A0A058ZV19	A0A059C4U7	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A058ZV19	EUGRSUZ_F00078	A0A058ZV19	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A059C8G8	EUGRSUZ_F00078	A0A059C8G8	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.543
EUGRSUZ_A00443	EUGRSUZ_F00078	A0A059DC40	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.532
EUGRSUZ_A00446	EUGRSUZ_F00078	A0A059DCU1	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.542
EUGRSUZ_A00448	EUGRSUZ_B01678	A0A059DBT9	A0A059D358	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_A00457	EUGRSUZ_F00078	A0A059DCC9	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.534
EUGRSUZ_A00470	EUGRSUZ_D02666	A0A059DCU8	A0A059CK59	Uncharacterized protein.	Uncharacterized protein.	0.529
EUGRSUZ_A00470	EUGRSUZ_E01959	A0A059DCU8	A0A059C4U7	Uncharacterized protein.	Uncharacterized protein.	0.483
EUGRSUZ_A00470	EUGRSUZ_F00078	A0A059DCU8	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.541
EUGRSUZ_B01678	EUGRSUZ_A00448	A0A059D358	A0A059DBT9	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_B01678	EUGRSUZ_D02666	A0A059D358	A0A059CK59	Uncharacterized protein.	Uncharacterized protein.	0.525
EUGRSUZ_B01678	EUGRSUZ_E01959	A0A059D358	A0A059C4U7	Uncharacterized protein.	Uncharacterized protein.	0.488
EUGRSUZ_B01678	EUGRSUZ_E02337	A0A059D358	A0A059C709	Uncharacterized protein.	Uncharacterized protein.	0.539
EUGRSUZ_B01678	EUGRSUZ_E03471	A0A059D358	A0A059C915	Uncharacterized protein.	Uncharacterized protein.	0.538
EUGRSUZ_B01678	EUGRSUZ_F00078	A0A059D358	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.537
EUGRSUZ_C00025	EUGRSUZ_F00078	A0A059CKX2	A0A059BJF6	Uncharacterized protein.	Uncharacterized protein.	0.540
EUGRSUZ_D02666	A0A058ZV19	A0A059CK59	A0A058ZV19	Uncharacterized protein.	Uncharacterized protein.	0.516
EUGRSUZ_D02666	EUGRSUZ_A00470	A0A059CK59	A0A059DCU8	Uncharacterized protein.	Uncharacterized protein.	0.529