(23 nodes) mRNA decay by 3 to 5 exoribonuclease network (Eucalyptus grandis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_B02158	Uncharacterized protein. (200 aa)
	EUGRSUZ_J00205	Uncharacterized protein; Belongs to the RNR ribonuclease family. (932 aa)
	EUGRSUZ_J00908	Uncharacterized protein. (258 aa)
	EUGRSUZ_H01542	S1 domain-containing protein. (327 aa)
	EUGRSUZ_H02323	Uncharacterized protein. (469 aa)
	EUGRSUZ_G01770	RNase_PH_C domain-containing protein. (227 aa)
	EUGRSUZ_G02573	Uncharacterized protein. (286 aa)
	EUGRSUZ_F03624	Uncharacterized protein. (1296 aa)
	EUGRSUZ_F03766	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1110 aa)
	EUGRSUZ_F04376	Uncharacterized protein. (332 aa)
	EUGRSUZ_C02924	RNase_PH domain-containing protein. (243 aa)
	EUGRSUZ_C04004	Uncharacterized protein. (663 aa)
	EUGRSUZ_B00371	KH_dom_type_1 domain-containing protein. (236 aa)
	EUGRSUZ_B02279	Uncharacterized protein. (1346 aa)
	EUGRSUZ_B03380	Uncharacterized protein. (919 aa)
	EUGRSUZ_A00059	Uncharacterized protein. (303 aa)
	EUGRSUZ_A00263	Uncharacterized protein. (172 aa)
	EUGRSUZ_A00069	RNase_PH domain-containing protein. (310 aa)
	EUGRSUZ_A00267	RNase_PH domain-containing protein. (262 aa)
	EUGRSUZ_A00063	RNase_PH domain-containing protein. (234 aa)
	EUGRSUZ_A00266	Uncharacterized protein. (249 aa)
	EUGRSUZ_A00265	RNase_PH domain-containing protein. (266 aa)
	EUGRSUZ_A01270	RNB domain-containing protein. (795 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_A00059	EUGRSUZ_A00063	A0A059DAB2	A0A059DBR6	Uncharacterized protein.	RNase_PH domain-containing protein.	0.545
EUGRSUZ_A00059	EUGRSUZ_A00069	A0A059DAB2	A0A059DB13	Uncharacterized protein.	RNase_PH domain-containing protein.	0.901
EUGRSUZ_A00059	EUGRSUZ_A00263	A0A059DAB2	A0A059DAW2	Uncharacterized protein.	Uncharacterized protein.	0.900
EUGRSUZ_A00059	EUGRSUZ_A00265	A0A059DAB2	A0A059DCB2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.546
EUGRSUZ_A00059	EUGRSUZ_A00266	A0A059DAB2	A0A059DBV3	Uncharacterized protein.	Uncharacterized protein.	0.544
EUGRSUZ_A00059	EUGRSUZ_A00267	A0A059DAB2	A0A059DBB3	Uncharacterized protein.	RNase_PH domain-containing protein.	0.545
EUGRSUZ_A00059	EUGRSUZ_A01270	A0A059DAB2	A0A059DFG1	Uncharacterized protein.	RNB domain-containing protein.	0.910
EUGRSUZ_A00059	EUGRSUZ_B00371	A0A059DAB2	A0A059CYC3	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.975
EUGRSUZ_A00059	EUGRSUZ_B02158	A0A059DAB2	A0A059D4A7	Uncharacterized protein.	Uncharacterized protein.	0.976
EUGRSUZ_A00059	EUGRSUZ_B02279	A0A059DAB2	A0A059D515	Uncharacterized protein.	Uncharacterized protein.	0.748
EUGRSUZ_A00059	EUGRSUZ_B03380	A0A059DAB2	A0A059D968	Uncharacterized protein.	Uncharacterized protein.	0.748
EUGRSUZ_A00059	EUGRSUZ_C02924	A0A059DAB2	A0A059CUE7	Uncharacterized protein.	RNase_PH domain-containing protein.	0.970
EUGRSUZ_A00059	EUGRSUZ_C04004	A0A059DAB2	A0A059CWM0	Uncharacterized protein.	Uncharacterized protein.	0.920
EUGRSUZ_A00059	EUGRSUZ_F03624	A0A059DAB2	A0A059BVX0	Uncharacterized protein.	Uncharacterized protein.	0.657
EUGRSUZ_A00059	EUGRSUZ_F03766	A0A059DAB2	A0A059BWT5	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.910
EUGRSUZ_A00059	EUGRSUZ_F04376	A0A059DAB2	A0A059BYI9	Uncharacterized protein.	Uncharacterized protein.	0.967
EUGRSUZ_A00059	EUGRSUZ_G01770	A0A059DAB2	A0A059BDJ9	Uncharacterized protein.	RNase_PH_C domain-containing protein.	0.934
EUGRSUZ_A00059	EUGRSUZ_G02573	A0A059DAB2	A0A059BFR0	Uncharacterized protein.	Uncharacterized protein.	0.940
EUGRSUZ_A00059	EUGRSUZ_H01542	A0A059DAB2	A0A059AYJ7	Uncharacterized protein.	S1 domain-containing protein.	0.967
EUGRSUZ_A00059	EUGRSUZ_H02323	A0A059DAB2	A0A059B1N6	Uncharacterized protein.	Uncharacterized protein.	0.978