7 items (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_F02300	Uncharacterized protein. (325 aa)
	EUGRSUZ_E02363	Uncharacterized protein. (184 aa)
	EUGRSUZ_D02267	Uncharacterized protein. (398 aa)
	EUGRSUZ_B00637	Uncharacterized protein. (532 aa)
	EUGRSUZ_B00638	Uncharacterized protein. (272 aa)
	EUGRSUZ_A02949	Uncharacterized protein. (214 aa)
	A0A058ZTE0	Uncharacterized protein. (154 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A058ZTE0	EUGRSUZ_A02949	A0A058ZTE0	A0A059DKJ1	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A058ZTE0	EUGRSUZ_E02363	A0A058ZTE0	A0A059C5K4	Uncharacterized protein.	Uncharacterized protein.	0.900
EUGRSUZ_A02949	A0A058ZTE0	A0A059DKJ1	A0A058ZTE0	Uncharacterized protein.	Uncharacterized protein.	0.908
EUGRSUZ_A02949	EUGRSUZ_E02363	A0A059DKJ1	A0A059C5K4	Uncharacterized protein.	Uncharacterized protein.	0.910
EUGRSUZ_B00638	EUGRSUZ_F02300	A0A059CZW4	A0A059BRV7	Uncharacterized protein.	Uncharacterized protein.	0.902
EUGRSUZ_E02363	A0A058ZTE0	A0A059C5K4	A0A058ZTE0	Uncharacterized protein.	Uncharacterized protein.	0.900
EUGRSUZ_E02363	EUGRSUZ_A02949	A0A059C5K4	A0A059DKJ1	Uncharacterized protein.	Uncharacterized protein.	0.910
EUGRSUZ_F02300	EUGRSUZ_B00638	A0A059BRV7	A0A059CZW4	Uncharacterized protein.	Uncharacterized protein.	0.902