23 items (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_J01079	Phenylalanine ammonia-lyase. (715 aa)
	EUGRSUZ_J00907	Uncharacterized protein; Belongs to the PAL/histidase family. (723 aa)
	EUGRSUZ_J03114	Epimerase domain-containing protein. (421 aa)
	EUGRSUZ_I01134	Uncharacterized protein. (246 aa)
	EUGRSUZ_H04648	Uncharacterized protein. (236 aa)
	EUGRSUZ_H04644	Uncharacterized protein. (136 aa)
	EUGRSUZ_H04646	Uncharacterized protein. (236 aa)
	EUGRSUZ_H04650	Uncharacterized protein. (235 aa)
	EUGRSUZ_H04643	Uncharacterized protein. (189 aa)
	EUGRSUZ_G01417	Uncharacterized protein. (247 aa)
	EUGRSUZ_G02848	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02852	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02849	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02851	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02850	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_C00924	Uncharacterized protein. (238 aa)
	EUGRSUZ_C00927	Uncharacterized protein. (186 aa)
	EUGRSUZ_C00925	Uncharacterized protein. (238 aa)
	EUGRSUZ_C03680	Uncharacterized protein. (253 aa)
	EUGRSUZ_C03932	Uncharacterized protein. (97 aa)
	EUGRSUZ_C03570	Phenylalanine ammonia-lyase. (703 aa)
	EUGRSUZ_B02687	Uncharacterized protein. (233 aa)
	EUGRSUZ_A01144	Phenylalanine ammonia-lyase. (708 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_A01144	EUGRSUZ_B02687	A0A059DDG3	A0A059D711	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00924	A0A059DDG3	A0A059CM74	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00925	A0A059DDG3	A0A059CMV0	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00927	A0A059DDG3	A0A059CMG4	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C03680	A0A059DDG3	A0A059CUV2	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C03932	A0A059DDG3	A0A059CVZ1	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_G01417	A0A059DDG3	A0A059BC07	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.625
EUGRSUZ_A01144	EUGRSUZ_H04643	A0A059DDG3	A0A059B8J1	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04644	A0A059DDG3	A0A059B7W5	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04646	A0A059DDG3	A0A059B7W9	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04648	A0A059DDG3	A0A059B780	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04650	A0A059DDG3	A0A059B7X2	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_I01134	A0A059DDG3	A0A059AMV7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.625
EUGRSUZ_A01144	EUGRSUZ_J03114	A0A059DDG3	A0A059AJP9	Phenylalanine ammonia-lyase.	Epimerase domain-containing protein.	0.610
EUGRSUZ_B02687	EUGRSUZ_A01144	A0A059D711	A0A059DDG3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.585
EUGRSUZ_B02687	EUGRSUZ_C03570	A0A059D711	A0A059CW46	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.640
EUGRSUZ_B02687	EUGRSUZ_G02848	A0A059D711	A0A059BGW1	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.585
EUGRSUZ_B02687	EUGRSUZ_G02849	A0A059D711	A0A059BHE6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.585
EUGRSUZ_B02687	EUGRSUZ_G02850	A0A059D711	A0A059BIF0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.585
EUGRSUZ_B02687	EUGRSUZ_G02851	A0A059D711	A0A059BHV5	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.585