(51 nodes) (2014) Contrasting nitrogen fertilization treatments impact xylem gene expression and secondary cell wall lignification in Eucalyptus. network (Eucalyptus grandis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUGRSUZ_C00927	Uncharacterized protein. (186 aa)
	EUGRSUZ_L01734	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (556 aa)
	EUGRSUZ_L00359	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (585 aa)
	EUGRSUZ_L00355	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (545 aa)
	EUGRSUZ_K00141	Aminotran_1_2 domain-containing protein. (474 aa)
	EUGRSUZ_K02283	Glutamine synthetase. (344 aa)
	EUGRSUZ_K03111	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (589 aa)
	EUGRSUZ_K02996	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (562 aa)
	EUGRSUZ_J00532	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (585 aa)
	EUGRSUZ_J01079	Phenylalanine ammonia-lyase. (715 aa)
	EUGRSUZ_J00907	Uncharacterized protein; Belongs to the PAL/histidase family. (723 aa)
	EUGRSUZ_J01610	Gln-synt_C domain-containing protein. (408 aa)
	EUGRSUZ_J01607	Gln-synt_C domain-containing protein. (359 aa)
	EUGRSUZ_J01941	Uncharacterized protein; Belongs to the multicopper oxidase family. (524 aa)
	EUGRSUZ_J01606	Glutamine synthetase. (356 aa)
	EUGRSUZ_I01134	Uncharacterized protein. (246 aa)
	EUGRSUZ_H02679	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (471 aa)
	EUGRSUZ_H04648	Uncharacterized protein. (236 aa)
	EUGRSUZ_H04644	Uncharacterized protein. (136 aa)
	EUGRSUZ_H04646	Uncharacterized protein. (236 aa)
	EUGRSUZ_H04650	Uncharacterized protein. (235 aa)
	EUGRSUZ_H04643	Uncharacterized protein. (189 aa)
	EUGRSUZ_G01417	Uncharacterized protein. (247 aa)
	EUGRSUZ_G02570	Glutamine synthetase. (356 aa)
	EUGRSUZ_G02848	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02852	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02849	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G03028	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (561 aa)
	EUGRSUZ_G02851	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_G02850	Phenylalanine ammonia-lyase. (714 aa)
	EUGRSUZ_F02872	Glutamine synthetase. (356 aa)
	EUGRSUZ_E00610	SHMT domain-containing protein. (429 aa)
	EUGRSUZ_D01961	Aminotran_1_2 domain-containing protein. (702 aa)
	EUGRSUZ_C00924	Uncharacterized protein. (238 aa)
	EUGRSUZ_C00925	Uncharacterized protein. (238 aa)
	EUGRSUZ_C03680	Uncharacterized protein. (253 aa)
	EUGRSUZ_C03932	Uncharacterized protein. (97 aa)
	EUGRSUZ_C03570	Phenylalanine ammonia-lyase. (703 aa)
	EUGRSUZ_B00213	High-affinity nitrate transporter; Involved in nitrate transport. (205 aa)
	EUGRSUZ_B01163	Glutamine synthetase. (438 aa)
	EUGRSUZ_B02428	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (585 aa)
	EUGRSUZ_B02438	Uncharacterized protein. (455 aa)
	EUGRSUZ_B02794	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (556 aa)
	EUGRSUZ_B02795	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (556 aa)
	EUGRSUZ_B02797	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (556 aa)
	EUGRSUZ_B02687	Uncharacterized protein. (233 aa)
	EUGRSUZ_B02796	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (556 aa)
	EUGRSUZ_A01144	Phenylalanine ammonia-lyase. (708 aa)
	EUGRSUZ_A01282	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (571 aa)
	EUGRSUZ_A02097	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (443 aa)
	EUGRSUZ_A02935	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_A01144	EUGRSUZ_B01163	A0A059DDG3	A0A059D1G7	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.418
EUGRSUZ_A01144	EUGRSUZ_B02687	A0A059DDG3	A0A059D711	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00924	A0A059DDG3	A0A059CM74	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00925	A0A059DDG3	A0A059CMV0	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C00927	A0A059DDG3	A0A059CMG4	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C03680	A0A059DDG3	A0A059CUV2	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_C03932	A0A059DDG3	A0A059CVZ1	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_F02872	A0A059DDG3	A0A059BTG5	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.416
EUGRSUZ_A01144	EUGRSUZ_G01417	A0A059DDG3	A0A059BC07	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.625
EUGRSUZ_A01144	EUGRSUZ_G02570	A0A059DDG3	A0A059BGP5	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.418
EUGRSUZ_A01144	EUGRSUZ_H04643	A0A059DDG3	A0A059B8J1	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04644	A0A059DDG3	A0A059B7W5	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04646	A0A059DDG3	A0A059B7W9	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04648	A0A059DDG3	A0A059B780	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_H04650	A0A059DDG3	A0A059B7X2	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.585
EUGRSUZ_A01144	EUGRSUZ_I01134	A0A059DDG3	A0A059AMV7	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.625
EUGRSUZ_A01144	EUGRSUZ_J01606	A0A059DDG3	A0A059AEU3	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.416
EUGRSUZ_A01144	EUGRSUZ_J01607	A0A059DDG3	A0A059AEI8	Phenylalanine ammonia-lyase.	Gln-synt_C domain-containing protein.	0.418
EUGRSUZ_A01144	EUGRSUZ_J01610	A0A059DDG3	A0A059ADJ8	Phenylalanine ammonia-lyase.	Gln-synt_C domain-containing protein.	0.416
EUGRSUZ_A01144	EUGRSUZ_K02283	A0A059DDG3	A0A059A4F0	Phenylalanine ammonia-lyase.	Glutamine synthetase.	0.418