(10 nodes) Nitrogen metabolism network (Selenomonas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AME02798.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family. (434 aa)
	AME02799.1	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	AME03064.1	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	hcp	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (548 aa)
	AME03409.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AME03410.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	narH	Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	narZ	Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1231 aa)
	AME04341.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AME04552.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (449 aa)

Your Current Organism:

Selenomonas

NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AME02798.1	AME02799.1	AXE86_01130	AXE86_01135	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AME02798.1	AME03064.1	AXE86_01130	AXE86_02610	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AME02798.1	AME03409.1	AXE86_01130	AXE86_04555	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AME02798.1	AME04341.1	AXE86_01130	AXE86_09780	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AME02798.1	AME04552.1	AXE86_01130	AXE86_11000	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.912
AME02798.1	hcp	AXE86_01130	AXE86_02935	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.926
AME02798.1	narH	AXE86_01130	AXE86_04565	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AME02798.1	narZ	AXE86_01130	AXE86_04570	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.917
AME02799.1	AME02798.1	AXE86_01135	AXE86_01130	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	0.998
AME02799.1	AME03064.1	AXE86_01135	AXE86_02610	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AME02799.1	AME03409.1	AXE86_01135	AXE86_04555	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AME02799.1	AME04341.1	AXE86_01135	AXE86_09780	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AME02799.1	AME04552.1	AXE86_01135	AXE86_11000	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.918
AME02799.1	hcp	AXE86_01135	AXE86_02935	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.915
AME02799.1	narH	AXE86_01135	AXE86_04565	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AME02799.1	narZ	AXE86_01135	AXE86_04570	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.913
AME03064.1	AME02798.1	AXE86_02610	AXE86_01130	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.	0.900
AME03064.1	AME02799.1	AXE86_02610	AXE86_01135	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AME03064.1	AME03409.1	AXE86_02610	AXE86_04555	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AME03064.1	AME03410.1	AXE86_02610	AXE86_04560	Nitrate/nitrite transporter NarK; Involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943